NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0214923_10006112

Scaffold Ga0214923_10006112


Overview

Basic Information
Taxon OID3300023179 Open in IMG/M
Scaffold IDGa0214923_10006112 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Lake Lanier, Atlanta, Georgia, United States - LL-1510
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)13675
Total Scaffold Genes38 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)6 (15.79%)
Novel Protein Genes18 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (11.11%)
Associated Families18

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Lanier, Atlanta, Georgia, United States

Source Dataset Sampling Location
Location NameUSA: Georgia
CoordinatesLat. (o)34.2611Long. (o)-83.95Alt. (m)Depth (m)2
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000785Metagenome / Metatranscriptome891Y
F001754Metagenome / Metatranscriptome641Y
F003291Metagenome / Metatranscriptome495Y
F007113Metagenome / Metatranscriptome357Y
F007690Metagenome346Y
F011393Metagenome / Metatranscriptome291Y
F013298Metagenome / Metatranscriptome272Y
F017485Metagenome240Y
F017998Metagenome237Y
F018001Metagenome237Y
F019478Metagenome229Y
F024555Metagenome / Metatranscriptome205Y
F031098Metagenome / Metatranscriptome183N
F037728Metagenome167Y
F038234Metagenome166Y
F054034Metagenome140N
F062757Metagenome130N
F084236Metagenome / Metatranscriptome112Y

Sequences

Protein IDFamilyRBSSequence
Ga0214923_100061121F019478N/AMILKIYNTNRMVDTEFWNRRFRCLQVHETDTNYRFQFDDSEVPSRYVWIEVSKIGRIDNEGDWSYSLNYMKCNQHLVTAKWFGDWKNV
Ga0214923_1000611210F017998N/AMNLERLDLEKYEVLELERNNTIADPLYQQWMSELGVSSSYTDREGIIRANDLNNQYTYSVLAGNKSTKFSVSSILSVFK
Ga0214923_1000611211F037728N/AMKRLNITNFTNRVMEIHSDFFEVGYCSNGKDRYLIGLDIKDVVSFNPLSSKHYKMSIDKVTNEDGNYGIWLWDMGENISYPMSIMPDNISSVSEFTSFLNNTLKVADRGEFSGSNGCMIK
Ga0214923_1000611212F031098N/AMKTYYDIAIHTATKDVVNIKGVSYSQMMKIANDNPTLLKVEIVKEYSKKISKY
Ga0214923_1000611216F007113N/AMKIRLELTPEQLKTVEIALAELFNSDTWIAGRKEADIDKISVGAAYLLHVIESYNKNNKK
Ga0214923_1000611217F003291N/AMNTKEINEKLVSVFTQDELAALMTAMAGYVNVKRKQGRSTGIECVVFNKVCDALLLSNELNAVVIDTKPNSKAPMGSAAYKAYEAMYDSDVRAHS
Ga0214923_1000611218F001754N/AMSTIANPFKNFSASKMSNNPRFEVVVSFTDFLGKEHRIVCRNRKKLAEANQFLKMFKSETVRINSILSEYPVVMGKFPKKYHSEIKRELASAGFSTVSNFLIGK
Ga0214923_1000611224F013298N/AMNIREFYVKNYPTDDMGKGINPEATFDGLVQTLNNCHDVYEYLYVYDSIIRERLFEKLSEILNCKYEVIYQRWLSPIKKPL
Ga0214923_1000611225F011393N/AMPKGEQIANNRCEHCNIQLHTNDMGEYYPVINRMDKQTLIRGEYIPIGNTFQYPKNWGKRKGAMILLETRIADKRKGLIEAQIELAKLSACLEQVKEWDPNTLY
Ga0214923_1000611226F000785N/AMRVTNKAGMKFDCKRLMRFAEEKLGVSKCTAIAFTWESGEDSMGWYDWDETIWINLAQCKRMITVQKTILHEWTHAQQTFRWYNHFNLKYGYKNNPYEIAARENEKLVKRAYKKHK
Ga0214923_100061123F024555N/AMLTIKNIEKLYKLLVGNWKVGKVVTLDSSYLIQLYKYNRRETMQVNIERTPIGEGDTALYELWFWEDNSGGAKPIRRLLKKCDFELGPSYVIKNIENMMTLK
Ga0214923_1000611233F017485N/AMNNELKRKDIVEGITFILMIVATIGMFCLLYEVKELRELTKGVSNLQTIRK
Ga0214923_1000611235F054034N/AMLTIRTFKKLEGLVLKDGLKVESIFEFNERYSIWLSDGTNIEIDREPHWKSSTVIYYKMYIAGGTSAMTEFIMIRTINTLDRMKKHLIYIHDKYKQ
Ga0214923_1000611237F084236GAGMLTIKNKYKLVAETIVVSKNGTNEHWVVDDVIQLPGVYDIIVLRKQGIFDTIKRTIRILREKNELSMYSVKIIQRGKIIDKDQIRLSNIKTAEGMLNELKTIMEFI
Ga0214923_100061126F007690AGGVDDIDKLNNMLTIKNILKLQNQPIWDGWEVKLIYEGNHNDTYVFELHRESAWGNGDCTIMLERTGQPRQHTDTSKKDKAYFFIYNSQRTNVCATADWLADKDNMIAKLEYILVNKEKL
Ga0214923_100061127F018001N/AMLTIQNIGDLNGAQLNDWKVLTACQKQNPQRREDYYKIVLARMDNAGVMLDDRAAVIIDRNINPLLKGYHIKIVYESWDYEIDTIVWNKENIMNKDAFFGRILYKINGEYYKRKK
Ga0214923_100061128F062757N/AMLHIQNIRKLGGRRLFGGWIITAVGGNPNEPHYLLDINCNGPIGNRIDGCMISLNRIGELQRNMFKPDSTAYFLYYNGERTEVCVTKDWILNPENFISQLKYIIKEYHNKK
Ga0214923_100061129F038234N/AMLMIKNIDSLKGTYIGHWKIHYVGIEKDTYLIKVVHNGSPFDMFNLMIGRVKTSNGGYLMYCQETGKTHHLPIDDIRDRDTFIRFLIDELI
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