Scaffold Ga0214923_10005772

Overview

Basic Information

• Taxon OID: 3300023179
• Scaffold ID: Ga0214923_10005772
• Source Dataset Name: Freshwater microbial communities from Lake Lanier, Atlanta, Georgia, United States - LL-1510
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 14205
• Total Scaffold Genes: 48
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 20 (41.67%)
• Novel Protein Genes: 9
• Novel Protein Genes with Ribosome Binding Sites (RBS): 5 (55.56%)
• Associated Families: 9

Taxonomy: All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Lanier, Atlanta, Georgia, United States

Source Dataset Sampling Location

• Location Name: USA: Georgia
• Coordinates
  • Lat. (^o): 34.2611
  • Long. (^o): -83.95
  • Depth (m): 2

Associated Families

Family	Category	Number of Sequences	3D Structure?
F016774	Metagenome / Metatranscriptome	244	Y
F026210	Metagenome / Metatranscriptome	198	Y
F027756	Metagenome / Metatranscriptome	193	N
F030670	Metagenome / Metatranscriptome	184	Y
F032548	Metagenome / Metatranscriptome	179	Y
F034827	Metagenome / Metatranscriptome	173	Y
F048121	Metagenome / Metatranscriptome	148	N
F048123	Metagenome / Metatranscriptome	148	Y
F066486	Metagenome / Metatranscriptome	126	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0214923_1000577211	F026210	GGAG	MSHFVNANPLDYDAKYPQTADTHTNDEAKIVIMERNLGQEVMFQTEDETQFYGKIAGVPNSEHYRVVVNRNETPWEWYVREEAVRFVIDPLQKTNIM
Ga0214923_1000577213	F066486	AGGA	MRKVKDPNYLKLGKFKKKSVYDVDVDMSEHNRNYFLDLGRQVITEDQYVSIGFNYALLKGLELAEEIAKKNKKKK
Ga0214923_1000577218	F048121	N/A	MNTTKTQYTWSVKATDGQVVVAPKSYPTLRGAKIASKRFANKTGGSVVSVSTK
Ga0214923_1000577221	F016774	AGGAGG	VPPKKTKIQFLSEHIASLNHWRDELLKLDKTYFHKDHEKERTIKNMLNKYLDDVLEHNKKSKEKAKK
Ga0214923_1000577235	F032548	N/A	MKKKQNKNMEKAIKLLAELVDQADEDCPHDCRTIHFTNILEEASEFVKEYRNSK
Ga0214923_1000577236	F027756	N/A	MKLEDLVDRKILYLNYPINKFAIQEGKVSEISPAKKCIKINSDWHLIDNIRIIELFKEDERPKLGFGLPKNEKEAK
Ga0214923_1000577241	F030670	GGA	VNKVIRYIKELEDEFGKPIDKWAVYEEQINSKGHWVFKDAKIVKTFPSPYHARNWMENDGKRAYQSS
Ga0214923_1000577243	F034827	N/A	MKYTITARDKEAMVDFNLIKDGEVFSFFDPESVQKGNHSIYMKIKNGTNNIVDLDDGKVFNFSDKKRNTLNDPDEQQGDKVYKLNAKINIIV
Ga0214923_1000577244	F048123	GAG	MEQMKSRYDFNKAKLISYDGEIIEFAETKIIDKYADQVQEIMSLFNLKKGEYILTDESTIGHFGKETINKILLEKFKKKYGFSLTNKTNISKIAERMYNFRPF