Scaffold Ga0214923_10004934

Overview

Basic Information

• Taxon OID: 3300023179
• Scaffold ID: Ga0214923_10004934
• Source Dataset Name: Freshwater microbial communities from Lake Lanier, Atlanta, Georgia, United States - LL-1510
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 15766
• Total Scaffold Genes: 53
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 40 (75.47%)
• Novel Protein Genes: 5
• Novel Protein Genes with Ribosome Binding Sites (RBS): 5 (100.00%)
• Associated Families: 5

Taxonomy: All Organisms → cellular organisms → Bacteria (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Lanier, Atlanta, Georgia, United States

Source Dataset Sampling Location

• Location Name: USA: Georgia
• Coordinates
  • Lat. (^o): 34.2611
  • Long. (^o): -83.95
  • Depth (m): 2

Associated Families

Family	Category	Number of Sequences	3D Structure?
F035281	Metagenome / Metatranscriptome	172	Y
F041150	Metagenome / Metatranscriptome	160	Y
F042870	Metagenome / Metatranscriptome	157	Y
F054798	Metagenome / Metatranscriptome	139	N
F056376	Metagenome / Metatranscriptome	137	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0214923_1000493412	F035281	GGAG	MKNVLLLIALMFIGSVSYAGECACATGNCRVLRSRAVTVTQEIVQVPVAITRRTVEATRNVGSRTLYRVRSLVR
Ga0214923_1000493425	F056376	GGAG	MTLIKCFSTVVGHKEAQELVTDLNQMKSAQSEDFYIEYDRSRDYYKDDTYIVVGNVSEEDWETLNLDMDFMEVGNI
Ga0214923_1000493429	F054798	GGAG	MIYLYLNETQRLAEIVSELVKLGMGVVAELHGDKWHIEVTK
Ga0214923_1000493430	F041150	GGAG	MGMGSFAVGSFVIEYKDLKKICPNEIKAIEKAKYFKDIGWNTLSRWLGWDDPENLKDALYASVEEDKSKPVEKLKKDIDDIVEDIFQDYDKLVINLKKSFNKKTGLTLYFDSYDEEGGDRYDNPGDKDGCIFCVDGMVQLTSAGKKFKDIITERKWTQFG
Ga0214923_1000493453	F042870	AGGA	MIDQSQSDDLPDSKIPWWDNHYEDTYSEEVEDGYPYDMGTKVQE