Scaffold Ga0214923_10003899

Overview

Basic Information

• Taxon OID: 3300023179
• Scaffold ID: Ga0214923_10003899
• Source Dataset Name: Freshwater microbial communities from Lake Lanier, Atlanta, Georgia, United States - LL-1510
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 18455
• Total Scaffold Genes: 24
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 4 (16.67%)
• Novel Protein Genes: 6
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (33.33%)
• Associated Families: 6

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Lanier, Atlanta, Georgia, United States

Source Dataset Sampling Location

• Location Name: USA: Georgia
• Coordinates
  • Lat. (^o): 34.2611
  • Long. (^o): -83.95
  • Depth (m): 2

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000557	Metagenome / Metatranscriptome	1026	N
F000847	Metagenome / Metatranscriptome	861	N
F002356	Metagenome / Metatranscriptome	567	N
F006105	Metagenome / Metatranscriptome	381	Y
F008996	Metagenome	324	N
F024098	Metagenome	207	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0214923_1000389913	F002356	N/A	MNLKSAIDTLRTELRKFTTQKQAFADYKLVDGTVIRVDGDLVAGTPVYVITEDETLPAPDGEHQVEGVGVVKTEGGKITEVVVAEAPAPAEEVAVAAEITPEVAGEVVSEIAEGYPLVDPAMVEEIVKKHLVSIMEELKAAYTEMGKMKDKMAAFASQMETMTDIVEKVAELPSEAPKPTASAIVEQRRASAAQNFAAIAQSIQSLKNSK
Ga0214923_1000389917	F006105	AGG	VIYLSPNTTNTIVVTWTQRASSGDRYILRLTNIAKNVTTDFTLLKSANLSNYTERYDKFQIAVGSLETGSYRYEVYDTSSTVAAAVAVVETGLAYVQVVSLTFNTFANSIQYTVFGSSDEGVFDQTFDQSFA
Ga0214923_1000389921	F000847	AGG	MSWIRIKQALLALANAHPQVNSFGTGDPLAIGTDNTINLRTPSRERIVYPLVFADVQSASTDLGTLNLTVGVYFSDRVESIATMGGVVSGSPTLGWQDNEDEVLSDQLQIAQDFISALTNDPTQEWTLSTSVSLTRFVESRDDRTAGWVATMSFQLPYSHSVCEIPT
Ga0214923_100038994	F008996	N/A	MKLLANIAYHHHPNRVENLTKVIEAIKSYPVQSDIFVDTNDPQAAQELAHLPVTFHAHTAMGHPWELTSKHRNRIAEVYQHFDWVAYFEDDMMLPKEGFVNFTKQFDAMFEDNLYPSFTRIETYPNVEGEFSPDIAFNPTPNMWKEWNGKTYASLPFYINYHAFWMFSTKRLAEVLSRNPQALQTIPNNGLYRESLASLPIWSLELKPMLEMDENGELADHCKVYHLSNNYRDNSRNIKEIFKR
Ga0214923_100038996	F000557	N/A	MKLQDLTIDQFQRIAALEFSPVLTDYDKRAGVVAIVEGVDVSLVREMPAKGLTKRYKTIIAEWNELPTLAYKRRFKAGGKWWIPTVFTDELTAGQLIDLMDTDTTDEKKLVQNLHRIMATLCREGGFMGWFPKKYDGASHQERAELFKAHAKIGDVWGVVSFFLLSSESYLKVLSDYSKHLTKGMQAH
Ga0214923_100038999	F024098	N/A	MLFKVSGSLTSATNYRYVCDVKDAAGTTTLARLKCDKLPTTNYGFFDVQKVVETLVAPTKPTLAQVGFADHAGFYSGYRLTFMEEYGSTPVVQTGTTTNVTGNVSFAGNLEQLELADWSGEVYFPSDALQGGENALTTTCIPISSPANALNVVYSDSYGFLCVGAGFSGAVVSANVVYTNAAGSIVRNFSVPRPLSVSGSIHRFGAGPMNLKALTSAQCSDGQAGSFNFPTAEGAGYYIQFVDVTDAGYTATWFRIGPCQRFNSIPVHFVNKYGGIDSYTFTMKNRKRANIEREVFGYNSDVYATTTYNKIWAGSFDYVYALNSDWLTDAESEWLIEMVRSGYVWLELNGTLVEAVVNANQYQFVTRRNDRLTQLQIEVAVAYDNSIL