Basic Information | |
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Taxon OID | 3300023179 Open in IMG/M |
Scaffold ID | Ga0214923_10002754 Open in IMG/M |
Source Dataset Name | Freshwater microbial communities from Lake Lanier, Atlanta, Georgia, United States - LL-1510 |
Source Dataset Category | Metagenome |
Source Dataset Use Policy | Open |
Sequencing Center | DOE Joint Genome Institute (JGI) |
Sequencing Status | Permanent Draft |
Scaffold Components | |
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Scaffold Length (bps) | 22839 |
Total Scaffold Genes | 34 (view) |
Total Scaffold Genes with Ribosome Binding Sites (RBS) | 25 (73.53%) |
Novel Protein Genes | 8 (view) |
Novel Protein Genes with Ribosome Binding Sites (RBS) | 6 (75.00%) |
Associated Families | 8 |
Taxonomy | |
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Not Available | (Source: ) |
Source Dataset Ecosystem |
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Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Lanier, Atlanta, Georgia, United States |
Source Dataset Sampling Location | ||||||||
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Location Name | USA: Georgia | |||||||
Coordinates | Lat. (o) | 34.2611 | Long. (o) | -83.95 | Alt. (m) | Depth (m) | 2 | Location on Map |
Zoom: | Powered by OpenStreetMap © |
Family | Category | Number of Sequences | 3D Structure? |
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F000635 | Metagenome / Metatranscriptome | 970 | Y |
F001459 | Metagenome / Metatranscriptome | 690 | Y |
F003112 | Metagenome / Metatranscriptome | 506 | N |
F004760 | Metagenome / Metatranscriptome | 424 | N |
F025458 | Metagenome / Metatranscriptome | 201 | Y |
F039992 | Metagenome / Metatranscriptome | 162 | N |
F081071 | Metagenome / Metatranscriptome | 114 | Y |
F088506 | Metagenome | 109 | N |
Protein ID | Family | RBS | Sequence |
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Ga0214923_1000275413 | F001459 | AGG | MGGKAMRKLKAALAFIRDQEWVEEPKWLEEDEKALTAFLGTPTGKRLSLILLNLTLRQNASAVMKKPEGLADACGYAKGFRGCVATLESLATTKLNSAIAGYGDGEDEPVAN |
Ga0214923_1000275417 | F004760 | AGGAG | MPVYQYEDTRNGNVVELEKAVAERDKVPRYLKRFQVPARLTLVGVGEPLDNPLGVNQTNLMKGYYRQEQKLGSRFKSQYTPDSIKRAALRRKQNG |
Ga0214923_1000275422 | F025458 | N/A | MGHKILHHYLDGTSFFEDTRTIEEAHEENLTRIRELVTAKILEAGYDEVWQRNAALGVLTNIEVEQGREFIANLRSAYHDYKSRLLESTRDEADGIKFNMP |
Ga0214923_1000275423 | F003112 | N/A | MIKSLATWLTNLSLRFLMTRSEYACFKEALKFATENNTMVKETKYIGKVKHLLSVNRSIKRIVEEGRNRDEIVDAVVHLAVALKYLEGRGRES |
Ga0214923_1000275424 | F039992 | GGAGG | VSLDEVSDLKDRVATVSERLARMEERQMTLISMIERSLSSFGDLSNRVTAIEGLKTKMLLVAGALGAIISVAWDFVKSKLINGG |
Ga0214923_1000275428 | F000635 | GGAGG | MTLSEIAQYAGEKVGKTDSDTLLFLQKAASLAYRRVWNFAPWRETVTSSTYSVGTNRTITLGSNVETPLSVSYDKSEVDPIDLATIISQDADLLEETRTGTPVLYHFTGRNTSGIAQLDLYPRLATAGTETLRVVEKLKCLTRTNIVVDFPPSTEALNDELRLPHVHQVILALTHADALERERQYAKAQAVVQSANADLAAMANYELSQVGGVKQITPVSLGDLMTEEITAA |
Ga0214923_1000275430 | F081071 | GAGG | MTPMDYIELSGVPESKWPTFKEWFGWHEKLDLVGVAKDGDTIAGVAIARCLNDGQDPVHYKHTEDGDNVFVDLTVTSTDGISNALSRKALKCLLSILWDRFGPRRRIMFKRNGAYKEYDYLKFMTKAMA |
Ga0214923_1000275433 | F088506 | AGGA | MAMFNFQLDGEKQARKPMRSYIDIDESGRPKARIYADEYDDVKANPDFQPFISNAGKNIAMAQDNDAYQMNEARIADVEKRIDLKRQQTIKAETEARKAQEENNVYYGPDFLGSLGGLRQTYAEKKTARQQELKKLLEERSGYMETPEISAPMQAEAPTEQAPAEQTQAAQNEYINLKAPDGSMSRIKKSAWSGQSKTKPGKKVSEVYLDSGYSIIP |
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