NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0214923_10002754

Scaffold Ga0214923_10002754


Overview

Basic Information
Taxon OID3300023179 Open in IMG/M
Scaffold IDGa0214923_10002754 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Lake Lanier, Atlanta, Georgia, United States - LL-1510
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)22839
Total Scaffold Genes34 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)25 (73.53%)
Novel Protein Genes8 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)6 (75.00%)
Associated Families8

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Lanier, Atlanta, Georgia, United States

Source Dataset Sampling Location
Location NameUSA: Georgia
CoordinatesLat. (o)34.2611Long. (o)-83.95Alt. (m)Depth (m)2
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000635Metagenome / Metatranscriptome970Y
F001459Metagenome / Metatranscriptome690Y
F003112Metagenome / Metatranscriptome506N
F004760Metagenome / Metatranscriptome424N
F025458Metagenome / Metatranscriptome201Y
F039992Metagenome / Metatranscriptome162N
F081071Metagenome / Metatranscriptome114Y
F088506Metagenome109N

Sequences

Protein IDFamilyRBSSequence
Ga0214923_1000275413F001459AGGMGGKAMRKLKAALAFIRDQEWVEEPKWLEEDEKALTAFLGTPTGKRLSLILLNLTLRQNASAVMKKPEGLADACGYAKGFRGCVATLESLATTKLNSAIAGYGDGEDEPVAN
Ga0214923_1000275417F004760AGGAGMPVYQYEDTRNGNVVELEKAVAERDKVPRYLKRFQVPARLTLVGVGEPLDNPLGVNQTNLMKGYYRQEQKLGSRFKSQYTPDSIKRAALRRKQNG
Ga0214923_1000275422F025458N/AMGHKILHHYLDGTSFFEDTRTIEEAHEENLTRIRELVTAKILEAGYDEVWQRNAALGVLTNIEVEQGREFIANLRSAYHDYKSRLLESTRDEADGIKFNMP
Ga0214923_1000275423F003112N/AMIKSLATWLTNLSLRFLMTRSEYACFKEALKFATENNTMVKETKYIGKVKHLLSVNRSIKRIVEEGRNRDEIVDAVVHLAVALKYLEGRGRES
Ga0214923_1000275424F039992GGAGGVSLDEVSDLKDRVATVSERLARMEERQMTLISMIERSLSSFGDLSNRVTAIEGLKTKMLLVAGALGAIISVAWDFVKSKLINGG
Ga0214923_1000275428F000635GGAGGMTLSEIAQYAGEKVGKTDSDTLLFLQKAASLAYRRVWNFAPWRETVTSSTYSVGTNRTITLGSNVETPLSVSYDKSEVDPIDLATIISQDADLLEETRTGTPVLYHFTGRNTSGIAQLDLYPRLATAGTETLRVVEKLKCLTRTNIVVDFPPSTEALNDELRLPHVHQVILALTHADALERERQYAKAQAVVQSANADLAAMANYELSQVGGVKQITPVSLGDLMTEEITAA
Ga0214923_1000275430F081071GAGGMTPMDYIELSGVPESKWPTFKEWFGWHEKLDLVGVAKDGDTIAGVAIARCLNDGQDPVHYKHTEDGDNVFVDLTVTSTDGISNALSRKALKCLLSILWDRFGPRRRIMFKRNGAYKEYDYLKFMTKAMA
Ga0214923_1000275433F088506AGGAMAMFNFQLDGEKQARKPMRSYIDIDESGRPKARIYADEYDDVKANPDFQPFISNAGKNIAMAQDNDAYQMNEARIADVEKRIDLKRQQTIKAETEARKAQEENNVYYGPDFLGSLGGLRQTYAEKKTARQQELKKLLEERSGYMETPEISAPMQAEAPTEQAPAEQTQAAQNEYINLKAPDGSMSRIKKSAWSGQSKTKPGKKVSEVYLDSGYSIIP

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