Scaffold Ga0214923

Basic Information
Taxon OID	3300023179 Open in IMG/M
Scaffold ID	Ga0214923_10002730 Open in IMG/M
Source Dataset Name	Freshwater microbial communities from Lake Lanier, Atlanta, Georgia, United States - LL-1510
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

3300023179 Open in IMG/M

Scaffold ID

Ga0214923_10002730 Open in IMG/M

Source Dataset Name

Freshwater microbial communities from Lake Lanier, Atlanta, Georgia, United States - LL-1510

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

DOE Joint Genome Institute (JGI)

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	22985
Total Scaffold Genes	34 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	18 (52.94%)
Novel Protein Genes	6 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	3 (50.00%)
Associated Families	6

Scaffold Components

Scaffold Length (bps)

22985

Total Scaffold Genes

34 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

18 (52.94%)

Novel Protein Genes

6 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

3 (50.00%)

Associated Families

Taxonomy
Not Available	(Source: )

Taxonomy

Not Available

(Source: )

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Lanier, Atlanta, Georgia, United States

Source Dataset Ecosystem

Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Lanier, Atlanta, Georgia, United States

Source Dataset Sampling Location
Location Name	USA: Georgia
Coordinates	Lat. (^o)	34.2611	Long. (^o)	-83.95	Alt. (m)	Depth (m)	2
Location on Map

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Source Dataset Sampling Location

Location Name

USA: Georgia

Coordinates

Lat. (^o)

34.2611

Long. (^o)

-83.95

Alt. (m)

Depth (m)

Location on Map

Zoom:

Associated Families

Family	Category	Number of Sequences	3D Structure?
F007911	Metagenome / Metatranscriptome	342	N
F015449	Metagenome / Metatranscriptome	254	Y
F024499	Metagenome / Metatranscriptome	205	N
F031026	Metagenome	183	N
F041639	Metagenome	159	N
F093768	Metagenome	106	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0214923_100027301	F041639	N/A	MGRRPNTAILAQAAATGVGLRQARRQLEKGQAAASAKPMKPIEGIGLDGEIDRLESLAATLGEAAKQATGPERSSLIGDYTRVVEALRKMKGDRPDINEAEGKMVPIDEADKILARRTNALIPLLRGMAKRLAPICAHKPASEVEIEVENEVGQVMRQVQSAL
Ga0214923_1000273012	F007911	N/A	MSAVTMLDRLIESAFQELLSATVTGVTYHLSHDLSENLPPSIVIKASIGTEEPVQGSGVFSVPVEITLDQRYDQTTLAAHTQKCSQILQALYGSSSLASQLNTTTAIGSARCYNAKLDSAEPEAVDEERIMRRTFKLSVIAYPNSIAS
Ga0214923_1000273014	F015449	GAG	MVDSFWGTTNIKVAAAASAFGAKLREMDPVTCIIKEDGHRQFTFWFNISGGEEAKLEMERTWAEMKSDEESAIRYVRAALENRETLLGLMKRAEPIISIQRGGQTLLVSERASPELKRAILKKL
Ga0214923_1000273020	F093768	AGG	MAKNPSPPALPGQSQPLRIIRATPDGVGISSDYINTIISRIEDLVLIAQSQKPIAGNNIQINYTAQGAVINAVTQ
Ga0214923_1000273031	F031026	GAGG	LSAEKGKGTLMRGGLAALLLALSFAIAGCATTSQTQDGPPPSPDSISYFIYAWDKAERSNPPCPQAYRDLFAESLKALSDSLAETERERARNQ
Ga0214923_100027308	F024499	N/A	MSEFTQGLQESLAALYEQAGTAATIGSTSVTGILSTVTRKESVELGGFDVDLNGTFTVDIANLTSAPAIGSVLQANSVSYRIVSVDTSIGSYVLGLREA

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0214923_10002730

Overview

Ecosystem & Geography

Associated Families

Sequences