Scaffold Ga0214923_10002626

Overview

Basic Information

• Taxon OID: 3300023179
• Scaffold ID: Ga0214923_10002626
• Source Dataset Name: Freshwater microbial communities from Lake Lanier, Atlanta, Georgia, United States - LL-1510
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 23605
• Total Scaffold Genes: 28
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 7 (25.00%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (33.33%)
• Associated Families: 3

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Lanier, Atlanta, Georgia, United States

Source Dataset Sampling Location

• Location Name: USA: Georgia
• Coordinates
  • Lat. (^o): 34.2611
  • Long. (^o): -83.95
  • Depth (m): 2

Associated Families

Family	Category	Number of Sequences	3D Structure?
F035189	Metagenome	172	Y
F041772	Metagenome	159	Y
F048303	Metagenome	148	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0214923_1000262611	F035189	N/A	MLKSKAERLKETITLLKKLPEVGVARESYAYSQVQDMMTEWVNGGGYKKEVIDFESHLGTLTLPIVEGQVSSLDLKVKVKK
Ga0214923_1000262617	F041772	GAG	MEVILKNLATALLAYSAHYGATKFYNYACVPDGIVGYMSGLITTGSPICQAGIQVISNTQVSYSSMILMGATRIIVDMVAPGTAALTK
Ga0214923_1000262625	F048303	N/A	MDISTLPKTHVLTKDEEEFVKKLSPKEKELHLLAIQLLETSYRPEWSHMYKEKLHSK