NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0214923_10001937

Scaffold Ga0214923_10001937


Overview

Basic Information
Taxon OID3300023179 Open in IMG/M
Scaffold IDGa0214923_10001937 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Lake Lanier, Atlanta, Georgia, United States - LL-1510
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)28474
Total Scaffold Genes44 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)20 (45.45%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families4

Taxonomy
All Organisms → cellular organisms → Bacteria(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Lanier, Atlanta, Georgia, United States

Source Dataset Sampling Location
Location NameUSA: Georgia
CoordinatesLat. (o)34.2611Long. (o)-83.95Alt. (m)Depth (m)2
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F014726Metagenome / Metatranscriptome260Y
F016141Metagenome / Metatranscriptome249Y
F024095Metagenome / Metatranscriptome207Y
F060856Metagenome / Metatranscriptome132Y

Sequences

Protein IDFamilyRBSSequence
Ga0214923_1000193726F024095N/AMNNTDSIPFVYVVTAQCSAAVGSTASFTLVMQADSRFELSAILGTGGAAFDTENTLPNPNSFSVSIRDQSTGRDLSSAPVPQRVLCGNAYQQILQRRPIVFEPQSNILFTFTNLGAAVNNITLALHGYKSIIS
Ga0214923_1000193727F016141N/AMNPDILNSLQRRFGSADFSRYQIVRGQKYDFVRLLAAGTSSVSFFSNPLGASDPGAGGSGIFKTLEQTNLVKNASFGQEYFALTQIRTYANFVPQVRQGFTPGTNFAFRGYTALANSAMEKLNDLLHRGVLEISFAQKLYYQISKPFIMCPPGFGIDVASLGSSRTGVAAETQVSDTNWRAQPDWRAESVYNIDPIQIIEPEIQIGAVINFPEGNTPDFTNTALTTADATGTPSVELGLVFDGYVIRPSQ
Ga0214923_1000193728F014726N/AMATSSTQSEAVIMAASAQFGTIDYSRWQAVRWQWWSYIQYPSAGTTELNFFGQVAGQTGVTTADTNLPKAGSFGQTHFLLKSISTDIRIPSNDVDGFTLANQATLDTRTLSSDIINGFAQAGVFTLNIGARPFATVPKPFLYLPPPGNEVDYENSYANQILAVPTTGTTTVVGLPWATQIRSRKNVYITDPNILIEAEQQFNAKISFPSGIVPVIASNVVNDTTNPLKIGVIFDGVLLRPMQ
Ga0214923_100019375F060856N/AMSKFTITKLVDAYAEASAAAKRAAEDADELKAKILALGDGQFLGTDHKVTVSTSIPVRFDSVLFRETHPALYEEFKKQGDPIQSVRIYGR

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