Basic Information | |
---|---|
Taxon OID | 3300023179 Open in IMG/M |
Scaffold ID | Ga0214923_10001937 Open in IMG/M |
Source Dataset Name | Freshwater microbial communities from Lake Lanier, Atlanta, Georgia, United States - LL-1510 |
Source Dataset Category | Metagenome |
Source Dataset Use Policy | Open |
Sequencing Center | DOE Joint Genome Institute (JGI) |
Sequencing Status | Permanent Draft |
Scaffold Components | |
---|---|
Scaffold Length (bps) | 28474 |
Total Scaffold Genes | 44 (view) |
Total Scaffold Genes with Ribosome Binding Sites (RBS) | 20 (45.45%) |
Novel Protein Genes | 4 (view) |
Novel Protein Genes with Ribosome Binding Sites (RBS) | 0 (0.00%) |
Associated Families | 4 |
Taxonomy | |
---|---|
All Organisms → cellular organisms → Bacteria | (Source: UniRef50) |
Source Dataset Ecosystem |
---|
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Lanier, Atlanta, Georgia, United States |
Source Dataset Sampling Location | ||||||||
---|---|---|---|---|---|---|---|---|
Location Name | USA: Georgia | |||||||
Coordinates | Lat. (o) | 34.2611 | Long. (o) | -83.95 | Alt. (m) | Depth (m) | 2 | Location on Map |
Zoom: | Powered by OpenStreetMap © |
Family | Category | Number of Sequences | 3D Structure? |
---|---|---|---|
F014726 | Metagenome / Metatranscriptome | 260 | Y |
F016141 | Metagenome / Metatranscriptome | 249 | Y |
F024095 | Metagenome / Metatranscriptome | 207 | Y |
F060856 | Metagenome / Metatranscriptome | 132 | Y |
Protein ID | Family | RBS | Sequence |
---|---|---|---|
Ga0214923_1000193726 | F024095 | N/A | MNNTDSIPFVYVVTAQCSAAVGSTASFTLVMQADSRFELSAILGTGGAAFDTENTLPNPNSFSVSIRDQSTGRDLSSAPVPQRVLCGNAYQQILQRRPIVFEPQSNILFTFTNLGAAVNNITLALHGYKSIIS |
Ga0214923_1000193727 | F016141 | N/A | MNPDILNSLQRRFGSADFSRYQIVRGQKYDFVRLLAAGTSSVSFFSNPLGASDPGAGGSGIFKTLEQTNLVKNASFGQEYFALTQIRTYANFVPQVRQGFTPGTNFAFRGYTALANSAMEKLNDLLHRGVLEISFAQKLYYQISKPFIMCPPGFGIDVASLGSSRTGVAAETQVSDTNWRAQPDWRAESVYNIDPIQIIEPEIQIGAVINFPEGNTPDFTNTALTTADATGTPSVELGLVFDGYVIRPSQ |
Ga0214923_1000193728 | F014726 | N/A | MATSSTQSEAVIMAASAQFGTIDYSRWQAVRWQWWSYIQYPSAGTTELNFFGQVAGQTGVTTADTNLPKAGSFGQTHFLLKSISTDIRIPSNDVDGFTLANQATLDTRTLSSDIINGFAQAGVFTLNIGARPFATVPKPFLYLPPPGNEVDYENSYANQILAVPTTGTTTVVGLPWATQIRSRKNVYITDPNILIEAEQQFNAKISFPSGIVPVIASNVVNDTTNPLKIGVIFDGVLLRPMQ |
Ga0214923_100019375 | F060856 | N/A | MSKFTITKLVDAYAEASAAAKRAAEDADELKAKILALGDGQFLGTDHKVTVSTSIPVRFDSVLFRETHPALYEEFKKQGDPIQSVRIYGR |
⦗Top⦘ |