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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |
| Basic Information | |
|---|---|
| Taxon OID | 3300023179 Open in IMG/M |
| Scaffold ID | Ga0214923_10001937 Open in IMG/M |
| Source Dataset Name | Freshwater microbial communities from Lake Lanier, Atlanta, Georgia, United States - LL-1510 |
| Source Dataset Category | Metagenome |
| Source Dataset Use Policy | Open |
| Sequencing Center | DOE Joint Genome Institute (JGI) |
| Sequencing Status | Permanent Draft |
| Scaffold Components | |
|---|---|
| Scaffold Length (bps) | 28474 |
| Total Scaffold Genes | 44 (view) |
| Total Scaffold Genes with Ribosome Binding Sites (RBS) | 20 (45.45%) |
| Novel Protein Genes | 4 (view) |
| Novel Protein Genes with Ribosome Binding Sites (RBS) | 0 (0.00%) |
| Associated Families | 4 |
| Taxonomy | |
|---|---|
| All Organisms → cellular organisms → Bacteria | (Source: UniRef50) |
| Source Dataset Ecosystem |
|---|
| Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Lanier, Atlanta, Georgia, United States |
| Source Dataset Sampling Location | ||||||||
|---|---|---|---|---|---|---|---|---|
| Location Name | USA: Georgia | |||||||
| Coordinates | Lat. (o) | 34.2611 | Long. (o) | -83.95 | Alt. (m) | Depth (m) | 2 | Location on Map |
| Zoom: | Powered by OpenStreetMap © | |||||||
| Family | Category | Number of Sequences | 3D Structure? |
|---|---|---|---|
| F014726 | Metagenome / Metatranscriptome | 260 | Y |
| F016141 | Metagenome / Metatranscriptome | 249 | Y |
| F024095 | Metagenome / Metatranscriptome | 207 | Y |
| F060856 | Metagenome / Metatranscriptome | 132 | Y |
| Protein ID | Family | RBS | Sequence |
|---|---|---|---|
| Ga0214923_1000193726 | F024095 | N/A | MNNTDSIPFVYVVTAQCSAAVGSTASFTLVMQADSRFELSAILGTGGAAFDTENTLPNPNSFSVSIRDQSTGRDLSSAPVPQRVLCGNAYQQILQRRPIVFEPQSNILFTFTNLGAAVNNITLALHGYKSIIS |
| Ga0214923_1000193727 | F016141 | N/A | MNPDILNSLQRRFGSADFSRYQIVRGQKYDFVRLLAAGTSSVSFFSNPLGASDPGAGGSGIFKTLEQTNLVKNASFGQEYFALTQIRTYANFVPQVRQGFTPGTNFAFRGYTALANSAMEKLNDLLHRGVLEISFAQKLYYQISKPFIMCPPGFGIDVASLGSSRTGVAAETQVSDTNWRAQPDWRAESVYNIDPIQIIEPEIQIGAVINFPEGNTPDFTNTALTTADATGTPSVELGLVFDGYVIRPSQ |
| Ga0214923_1000193728 | F014726 | N/A | MATSSTQSEAVIMAASAQFGTIDYSRWQAVRWQWWSYIQYPSAGTTELNFFGQVAGQTGVTTADTNLPKAGSFGQTHFLLKSISTDIRIPSNDVDGFTLANQATLDTRTLSSDIINGFAQAGVFTLNIGARPFATVPKPFLYLPPPGNEVDYENSYANQILAVPTTGTTTVVGLPWATQIRSRKNVYITDPNILIEAEQQFNAKISFPSGIVPVIASNVVNDTTNPLKIGVIFDGVLLRPMQ |
| Ga0214923_100019375 | F060856 | N/A | MSKFTITKLVDAYAEASAAAKRAAEDADELKAKILALGDGQFLGTDHKVTVSTSIPVRFDSVLFRETHPALYEEFKKQGDPIQSVRIYGR |
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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |