Scaffold Ga0214923_10001331

Overview

Basic Information

• Taxon OID: 3300023179
• Scaffold ID: Ga0214923_10001331
• Source Dataset Name: Freshwater microbial communities from Lake Lanier, Atlanta, Georgia, United States - LL-1510
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 35312
• Total Scaffold Genes: 45
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 12 (26.67%)
• Novel Protein Genes: 7
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (14.29%)
• Associated Families: 7

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Lanier, Atlanta, Georgia, United States

Source Dataset Sampling Location

• Location Name: USA: Georgia
• Coordinates
  • Lat. (^o): 34.2611
  • Long. (^o): -83.95
  • Depth (m): 2

Associated Families

Family	Category	Number of Sequences	3D Structure?
F014513	Metagenome	262	Y
F015061	Metagenome / Metatranscriptome	257	Y
F048800	Metagenome / Metatranscriptome	147	Y
F056542	Metagenome / Metatranscriptome	137	Y
F061533	Metagenome	131	N
F075040	Metagenome	119	Y
F101028	Metagenome	102	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0214923_1000133111	F101028	GAG	MPAEGSVFDGFTSIIAQDADTHPSYLPESVVSESVNRTFRGGINRTRPSIRNIPIIAGAGQDETIVNDILGGSFQGAYPYRATNFRTNDGILLSVSGIIYFLKIVNNRAFAYKIIEGNDPGMMHTWFVQAEDRAYIQNGYQNAIAWDGVLGTLTANEIQNGDYCEIVSVGTTDFTIIGAPSNTVGVKFTAVITDTQRGTGTGTVKLPAYRLNPYLAKMPIGTIMEYAFGRVFVADRFNQIYASDIIYGGGFTDTKNTENFTEIGYWAEGGAFSTPAMMGNITGMKVMPQIGTNLRGQGELVVLTGNGAFSMDVSIPRSQWNTSNIQRISLLGRGCTSPYLGLANSELWFRSHDGWAFYSNSQSEFARYFSLRKLSREVNKWVSNDTPWLKQFASTMFFNNYIISTVAPQTYRAEGVEGLNRYHRGMVVLDLDQSSSPAPDAQLQFRWNGIWTGIRPTQLLTALITGEKRGFGFSFDKDNKNRLYEFTIAQGDDYGPNGSRQIDSFFTTGRYDFNRSGATNKFLRKKITGGEMWMSEIKGQVESDVDFRADSNPCWSQLKVPTTFGCDPCSPVVTECFPQRGGNRYKRYKFNTPDPSECNDLAGIPSVEGSEFQIRVHLTGAATVDRVRLMANIKNNDDSPVGDCPEENQECEPFLCCQEKYWEYNIVN
Ga0214923_1000133112	F048800	N/A	MDNQDSSPAITFPNVPDDFCPTGNWQNVFQQFIDEVLTNGTINVPGLGDVTPQQVAQINQTLADQQTQISANTTNIANLTTQVNAIPVIKARYGNIGSVPVGDSIQTVSFAALPSATYGISITPTCNATIGTSATPLFALVDGSKTTTGFSIRVENNLSQITSVDWMAVHTS
Ga0214923_1000133113	F056542	N/A	MTPLKGTDPKLTSGGSPTRGMIREGMGNMNPPNTGKNPYSSAPLPKSGKPVGSK
Ga0214923_1000133115	F014513	N/A	MADTLEEMVEIVKGFCGDSGVCSYDRAVKSINQARRLLWNKRNWTTQEEYVQICCVNDCFTLPSRYEQIRLAWIGNESASLGDEWFNATNAFALHADHSCHRGIVEVGGLHVLFRDYTTHPYQIGVMAEEAEDIGVELMFEAQDQYDTYHKVKVTTANPPTLAKSDLLVKGIRAVSKPVTKGRIRVYAYDTALEAKTLIAIYQPNDAHPTFRRFKAPRTCECITLYASKKYFDLTDPKELMEFSADAMIYAVLALNSRENRKAQEFLSNLALAVQEQEKEMENVEIPTAGPIRFANYSRAENLIGSDLLSPSPNDYFLYR
Ga0214923_1000133120	F075040	N/A	MKETPTVKKEVAEKPEPKYATWNITQPNDLQRDIYLRLVSAAAADGRFLLGNLPNAQAVVKQGDHLKGVAEILAKCYE
Ga0214923_1000133125	F061533	N/A	MSNQLDGIEQKDIIKRVTGKVTKLWEPKTFNGPKGEFVIQGGDIEIDGQTYGLKFFNNTQEQSIKGNVVTLSSVRGKHGLTGVSLEHESYDGKNGKVDRDIIKVTATGKVEFDRPSEEPARVTSTPKVIVTDNPEKALDEIVELHQYIDSLVRMAYLGKITDEETLRSYVSSVFIEANRKGIHYSTKAEAPKKEEPVKDEADPDDWGSVIVPSGSHKGKKLAEIGKPALTKLYEYYLKKGFNTPFAKCVEKAAEDLNLDSVTTDEEEDNIPW
Ga0214923_1000133127	F015061	N/A	MSEQTPQNETSKAVMEAFTFIKSGDETLNERVHAMGSLLHTAAMMVIRSESRKGEGFEAIKYLELAFMYYQNSQFRKRFDQPDEEKDNQPVLFTP