Basic Information | |
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Taxon OID | 3300023179 Open in IMG/M |
Scaffold ID | Ga0214923_10000502 Open in IMG/M |
Source Dataset Name | Freshwater microbial communities from Lake Lanier, Atlanta, Georgia, United States - LL-1510 |
Source Dataset Category | Metagenome |
Source Dataset Use Policy | Open |
Sequencing Center | DOE Joint Genome Institute (JGI) |
Sequencing Status | Permanent Draft |
Scaffold Components | |
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Scaffold Length (bps) | 59137 |
Total Scaffold Genes | 96 (view) |
Total Scaffold Genes with Ribosome Binding Sites (RBS) | 86 (89.58%) |
Novel Protein Genes | 4 (view) |
Novel Protein Genes with Ribosome Binding Sites (RBS) | 4 (100.00%) |
Associated Families | 4 |
Taxonomy | |
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All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes | (Source: UniRef50) |
Source Dataset Ecosystem |
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Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Lanier, Atlanta, Georgia, United States |
Source Dataset Sampling Location | ||||||||
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Location Name | USA: Georgia | |||||||
Coordinates | Lat. (o) | 34.2611 | Long. (o) | -83.95 | Alt. (m) | Depth (m) | 2 | Location on Map |
Zoom: | Powered by OpenStreetMap © |
Family | Category | Number of Sequences | 3D Structure? |
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F006261 | Metagenome / Metatranscriptome | 377 | Y |
F008607 | Metagenome | 330 | Y |
F011482 | Metagenome / Metatranscriptome | 290 | Y |
F024770 | Metagenome / Metatranscriptome | 204 | Y |
Protein ID | Family | RBS | Sequence |
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Ga0214923_1000050220 | F024770 | AGGAG | MSVSHQRVSVGTTATKLTSDYDGKDGQTINVQNPTGGVDVYLGGDGVTTTSYGFLLKADTSFSVELQGGEKLYAVVASGTQTVNIIRQGT |
Ga0214923_100005028 | F008607 | AGTAGG | MADAIYTKVQDFMTDTVSFYARSSVDKYNKPTYSAAVTTATGRLIYDTVKAVDAQGIEVTNIGRFVTYGPQTAITTNHKMVVGAETFNINAVDNIADENGAHHTVIKFGR |
Ga0214923_1000050286 | F011482 | GGAG | MRRLDDLTIEVKQMNLNISQTYVRKDVYDADSDRITQAMEHITDRLGKMESRSEWVIRTVGAMFIATVVGASIYVGQIIGF |
Ga0214923_1000050291 | F006261 | GAGG | MAVVSSAYTTTEPVQITNAGIWSFTAPENPSIRVTSTKVQQPLNLSIVETYGVFKPLGGSKTVVVSSSLYGIDGTYEFTTKGTAEWNDLYPVLTYQGTLHVHDPLGRQKYVRFVDRTWTELGPVASLIRNIKVTYYEVEAP |
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