NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0214923_10000502

Scaffold Ga0214923_10000502


Overview

Basic Information
Taxon OID3300023179 Open in IMG/M
Scaffold IDGa0214923_10000502 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Lake Lanier, Atlanta, Georgia, United States - LL-1510
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)59137
Total Scaffold Genes96 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)86 (89.58%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)4 (100.00%)
Associated Families4

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Lanier, Atlanta, Georgia, United States

Source Dataset Sampling Location
Location NameUSA: Georgia
CoordinatesLat. (o)34.2611Long. (o)-83.95Alt. (m)Depth (m)2
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F006261Metagenome / Metatranscriptome377Y
F008607Metagenome330Y
F011482Metagenome / Metatranscriptome290Y
F024770Metagenome / Metatranscriptome204Y

Sequences

Protein IDFamilyRBSSequence
Ga0214923_1000050220F024770AGGAGMSVSHQRVSVGTTATKLTSDYDGKDGQTINVQNPTGGVDVYLGGDGVTTTSYGFLLKADTSFSVELQGGEKLYAVVASGTQTVNIIRQGT
Ga0214923_100005028F008607AGTAGGMADAIYTKVQDFMTDTVSFYARSSVDKYNKPTYSAAVTTATGRLIYDTVKAVDAQGIEVTNIGRFVTYGPQTAITTNHKMVVGAETFNINAVDNIADENGAHHTVIKFGR
Ga0214923_1000050286F011482GGAGMRRLDDLTIEVKQMNLNISQTYVRKDVYDADSDRITQAMEHITDRLGKMESRSEWVIRTVGAMFIATVVGASIYVGQIIGF
Ga0214923_1000050291F006261GAGGMAVVSSAYTTTEPVQITNAGIWSFTAPENPSIRVTSTKVQQPLNLSIVETYGVFKPLGGSKTVVVSSSLYGIDGTYEFTTKGTAEWNDLYPVLTYQGTLHVHDPLGRQKYVRFVDRTWTELGPVASLIRNIKVTYYEVEAP

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