Scaffold Ga0214923_10000437

Overview

Basic Information

• Taxon OID: 3300023179
• Scaffold ID: Ga0214923_10000437
• Source Dataset Name: Freshwater microbial communities from Lake Lanier, Atlanta, Georgia, United States - LL-1510
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 63359
• Total Scaffold Genes: 137
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 12 (8.76%)
• Novel Protein Genes: 5
• Novel Protein Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Associated Families: 5

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Lanier, Atlanta, Georgia, United States

Source Dataset Sampling Location

• Location Name: USA: Georgia
• Coordinates
  • Lat. (^o): 34.2611
  • Long. (^o): -83.95
  • Depth (m): 2

Associated Families

Family	Category	Number of Sequences	3D Structure?
F013299	Metagenome / Metatranscriptome	272	Y
F021986	Metagenome / Metatranscriptome	216	Y
F022647	Metagenome	213	Y
F023045	Metagenome / Metatranscriptome	211	Y
F032580	Metagenome / Metatranscriptome	179	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0214923_1000043712	F021986	N/A	MACHCLSLKDQKEFYSLLKARDSDLIIKMVRCVISATKRNKPSIDIFDITFKNLDSLVFTIEKSQYKELLSNCLDDLIAVEEYELCAEIKKILESKSKKKKEAL
Ga0214923_10000437125	F022647	N/A	MHKLLDLINEAKEGPIEYPANHKPGMRVTKGGSMCANCEYWVEKGNLCNNKYWLKWRNGDAKIPAPADEYCCNWWHAK
Ga0214923_100004372	F023045	N/A	MRYELAQQFAEFELPNDVKQAWKAGIPLIGSLRFTKMMLFANKVELTNDDIDYFMAMKPKQNEDETPESFRIRSKFAKALLKYRAHLYDYSVYYQQ
Ga0214923_1000043735	F013299	N/A	MRQKVSKEKRRWFIVMNSKCQFFCGLQYGGELVWTDDSNRAKPLDDERKFETLQVLCRGEELIMDYIN
Ga0214923_1000043779	F032580	N/A	MKLIYTKRELQELDTIEQAWDDDELKIDEDNVRVWLTHTENRQYNGDYVVEIKTNGSWTQHYMLFE