Scaffold Ga0214923_10000206

Overview

Basic Information

• Taxon OID: 3300023179
• Scaffold ID: Ga0214923_10000206
• Source Dataset Name: Freshwater microbial communities from Lake Lanier, Atlanta, Georgia, United States - LL-1510
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 91654
• Total Scaffold Genes: 129
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 81 (62.79%)
• Novel Protein Genes: 5
• Novel Protein Genes with Ribosome Binding Sites (RBS): 4 (80.00%)
• Associated Families: 5

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Lanier, Atlanta, Georgia, United States

Source Dataset Sampling Location

• Location Name: USA: Georgia
• Coordinates
  • Lat. (^o): 34.2611
  • Long. (^o): -83.95
  • Depth (m): 2

Associated Families

Family	Category	Number of Sequences	3D Structure?
F004092	Metagenome / Metatranscriptome	453	Y
F017301	Metagenome / Metatranscriptome	241	Y
F019826	Metagenome / Metatranscriptome	227	N
F028423	Metagenome / Metatranscriptome	191	Y
F070095	Metagenome / Metatranscriptome	123	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0214923_10000206109	F017301	N/A	MINDKTKALLASYGRSVLGAVIALYMAGVTDPKDLWAALVAALAPVALRALNPNDKAFGVLPDTGAVSDALSKIVPAKKAPAKKKTAKKK
Ga0214923_10000206128	F019826	GGA	MGFMRRSIRLGISKEEKVAGRITTLLSDFTLDLEAIGFYLAKSSPHIIYTRANEVLEAMQYNKEVDQLDRGVYHGRR
Ga0214923_100002062	F070095	AGGAGG	MEFYAGLEYVSLYINNLYPNGVAIEIPTWLLVGTIGLIYSIKLMRKDK
Ga0214923_1000020665	F004092	AGGA	MAEQNFSTYEGKWPCKVCQEIVKILRYWRETGDATWMCSQKHISKVNLIPPKKRKKDFAD
Ga0214923_1000020697	F028423	AGGGGG	MENLEKQELIQLIAFYKQKLSDTELELLKIQLEVNKLNSIILQSAQGPSKKSK