NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0214923_10000054

Scaffold Ga0214923_10000054


Overview

Basic Information
Taxon OID3300023179 Open in IMG/M
Scaffold IDGa0214923_10000054 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Lake Lanier, Atlanta, Georgia, United States - LL-1510
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)149678
Total Scaffold Genes220 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)156 (70.91%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (100.00%)
Associated Families2

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → Caudovirales → Myoviridae(Source: IMG-VR)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Lanier, Atlanta, Georgia, United States

Source Dataset Sampling Location
Location NameUSA: Georgia
CoordinatesLat. (o)34.2611Long. (o)-83.95Alt. (m)Depth (m)2
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F034483Metagenome174Y
F063400Metagenome / Metatranscriptome129Y

Sequences

Protein IDFamilyRBSSequence
Ga0214923_1000005410F063400GGAMIALNRKQMEKLVKIAEHFKEVEWFTIEEVEKNGIGPEVQVRFNLFGDIDKDDDVKVDITDLSTW
Ga0214923_10000054160F034483GAGGMKVYLSSTANLGDFINGMPVLSGLHKSYGKFELVIKGEMKKFNGIKEFLMYQDLFTEVNFDSDIWMYGSIINLSSWTREDKRHPDRPIETCRYENWLKEQYGMKFDVDDGFIVKTPEFDIEIKDDYYVGDRWNVGNIDDRRETHILSHLDKYEFIDYNKTMLENAYIIKNLKKPFITNFTGVGMLADMCNVPLYCVWKAEDWKPEFRRGEDVSWDDGKNINKVFEKHFYLNRQAKLVHAKDLEKLL

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