NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0233423_10027577

Scaffold Ga0233423_10027577


Overview

Basic Information
Taxon OID3300023177 Open in IMG/M
Scaffold IDGa0233423_10027577 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Lake Matano, South Sulawesi, Indonesia - Watercolumn_Matano_2014_112_MG
Source Dataset CategoryMetagenome
Source Dataset Use PolicyRestricted
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Note: The use of this dataset is restricted, as per the data usage policy of the Joint Genome Institute (JGI). Utilizing any of the sequences below requires obtaining a license from the dataset's corresponding author(s).


Scaffold Components
Scaffold Length (bps)2479
Total Scaffold Genes5 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)4 (80.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (100.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Bacteria(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Methane Metabolizing Microbial Communities From Different Methane-Rich Environments From Various Locations

Source Dataset Sampling Location
Location NameIndonesia: South Sulawesi
CoordinatesLat. (o)-2.4667Long. (o)121.2833Alt. (m)Depth (m)112
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F014811Metagenome260Y
F034747Metagenome174Y

Sequences

Protein IDFamilyRBSSequence
Ga0233423_100275772F014811AGGAMWIYDYKTKKEYFASSPRSKFYNYKSIVIEPIPGKPCTILIRKEMEEGRKPAQTLEQLDMLSNLST
Ga0233423_100275774F034747AGGAMSRNAYRVIRIVTAKSPSFNLSHDEELVSILEECTDFYDTLDSYGNGIIEVTGREFEEVKEKIEELIEGLKSTKTSQPENKNKANHYRKVLSEMKSEIENKGCISYEIY

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