Scaffold Ga0214921_10251110

Overview

Basic Information

• Taxon OID: 3300023174
• Scaffold ID: Ga0214921_10251110
• Source Dataset Name: Freshwater microbial communities from Lake Lanier, Atlanta, Georgia, United States - LL-1505
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1037
• Total Scaffold Genes: 4
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 3 (75.00%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (100.00%)
• Associated Families: 3

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Lanier, Atlanta, Georgia, United States

Source Dataset Sampling Location

• Location Name: USA: Georgia
• Coordinates
  • Lat. (^o): 34.2611
  • Long. (^o): -83.95
  • Depth (m): 2

Associated Families

Family	Category	Number of Sequences	3D Structure?
F011281	Metagenome / Metatranscriptome	292	Y
F020665	Metagenome / Metatranscriptome	222	Y
F022371	Metagenome / Metatranscriptome	214	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0214921_102511101	F011281	AGAAG	MSEFKQKVLTASVDRYVLTRTQCEMLRQDAEVIGMKRAPVLSKDGATRTVSRTRTCSSCWIPFAKHYEWIYKVMRELTDGINAEQWRFDIQGIQQLQILRYRPLQKFSWHYDTYTSEAPVRKLTAVVNLSAPTEYLGGGLQVKADIENARFIRDQGAG
Ga0214921_102511102	F020665	AGGAGG	MRKRKGKSIRVVKVEEYEAVKILVDVDDDLYEALAKAGRQHITKDKVACFTYALNKALLEMIEELK
Ga0214921_102511103	F022371	AGGAG	MLCLLELKDIVWVIGWFILYSWLILSAIYCAGYIILKLIDFIKEELDL