Scaffold Ga0214921_10165507

Overview

Basic Information

• Taxon OID: 3300023174
• Scaffold ID: Ga0214921_10165507
• Source Dataset Name: Freshwater microbial communities from Lake Lanier, Atlanta, Georgia, United States - LL-1505
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1461
• Total Scaffold Genes: 6
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 4 (66.67%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (100.00%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Crocinitomicaceae → unclassified Crocinitomicaceae → Crocinitomicaceae bacterium (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Lanier, Atlanta, Georgia, United States

Source Dataset Sampling Location

• Location Name: USA: Georgia
• Coordinates
  • Lat. (^o): 34.2611
  • Long. (^o): -83.95
  • Depth (m): 2

Associated Families

Family	Category	Number of Sequences	3D Structure?
F004583	Metagenome / Metatranscriptome	432	Y
F006220	Metagenome	378	Y
F071169	Metagenome	122	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0214921_101655072	F004583	AGGAG	MKSTRNSDRLREILVSTRHQIVALKDIQIDLLRYDSKVANQVATQISALEEVYKHQLSLVDIAERIEPKPRGWFSGQIKSKEDRLANIMD
Ga0214921_101655074	F071169	AGG	MISIEVQVNLDELDIVRRKLSYQLNKDLTSEETIKFLIERECNNAKKIPLAKKPHHEVAKSDITEAIYNGFTSTEAMKKLGVSRSTFFRHKAKERKLLEASE
Ga0214921_101655075	F006220	GAGG	MKKFKKFVEELAIASGTEMMRASQMRPSTFKDKSKYTRKTKHKKGSEND