NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0214921_10165507

Scaffold Ga0214921_10165507


Overview

Basic Information
Taxon OID3300023174 Open in IMG/M
Scaffold IDGa0214921_10165507 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Lake Lanier, Atlanta, Georgia, United States - LL-1505
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1461
Total Scaffold Genes6 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)4 (66.67%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (100.00%)
Associated Families3

Taxonomy
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Crocinitomicaceae → unclassified Crocinitomicaceae → Crocinitomicaceae bacterium(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Lanier, Atlanta, Georgia, United States

Source Dataset Sampling Location
Location NameUSA: Georgia
CoordinatesLat. (o)34.2611Long. (o)-83.95Alt. (m)Depth (m)2
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F004583Metagenome / Metatranscriptome432Y
F006220Metagenome378Y
F071169Metagenome122N

Sequences

Protein IDFamilyRBSSequence
Ga0214921_101655072F004583AGGAGMKSTRNSDRLREILVSTRHQIVALKDIQIDLLRYDSKVANQVATQISALEEVYKHQLSLVDIAERIEPKPRGWFSGQIKSKEDRLANIMD
Ga0214921_101655074F071169AGGMISIEVQVNLDELDIVRRKLSYQLNKDLTSEETIKFLIERECNNAKKIPLAKKPHHEVAKSDITEAIYNGFTSTEAMKKLGVSRSTFFRHKAKERKLLEASE
Ga0214921_101655075F006220GAGGMKKFKKFVEELAIASGTEMMRASQMRPSTFKDKSKYTRKTKHKKGSEND

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