Basic Information | |
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Taxon OID | 3300023174 Open in IMG/M |
Scaffold ID | Ga0214921_10165507 Open in IMG/M |
Source Dataset Name | Freshwater microbial communities from Lake Lanier, Atlanta, Georgia, United States - LL-1505 |
Source Dataset Category | Metagenome |
Source Dataset Use Policy | Open |
Sequencing Center | DOE Joint Genome Institute (JGI) |
Sequencing Status | Permanent Draft |
Scaffold Components | |
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Scaffold Length (bps) | 1461 |
Total Scaffold Genes | 6 (view) |
Total Scaffold Genes with Ribosome Binding Sites (RBS) | 4 (66.67%) |
Novel Protein Genes | 3 (view) |
Novel Protein Genes with Ribosome Binding Sites (RBS) | 3 (100.00%) |
Associated Families | 3 |
Taxonomy | |
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All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Crocinitomicaceae → unclassified Crocinitomicaceae → Crocinitomicaceae bacterium | (Source: UniRef50) |
Source Dataset Ecosystem |
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Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Lanier, Atlanta, Georgia, United States |
Source Dataset Sampling Location | ||||||||
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Location Name | USA: Georgia | |||||||
Coordinates | Lat. (o) | 34.2611 | Long. (o) | -83.95 | Alt. (m) | Depth (m) | 2 | Location on Map |
Zoom: | Powered by OpenStreetMap © |
Family | Category | Number of Sequences | 3D Structure? |
---|---|---|---|
F004583 | Metagenome / Metatranscriptome | 432 | Y |
F006220 | Metagenome | 378 | Y |
F071169 | Metagenome | 122 | N |
Protein ID | Family | RBS | Sequence |
---|---|---|---|
Ga0214921_101655072 | F004583 | AGGAG | MKSTRNSDRLREILVSTRHQIVALKDIQIDLLRYDSKVANQVATQISALEEVYKHQLSLVDIAERIEPKPRGWFSGQIKSKEDRLANIMD |
Ga0214921_101655074 | F071169 | AGG | MISIEVQVNLDELDIVRRKLSYQLNKDLTSEETIKFLIERECNNAKKIPLAKKPHHEVAKSDITEAIYNGFTSTEAMKKLGVSRSTFFRHKAKERKLLEASE |
Ga0214921_101655075 | F006220 | GAGG | MKKFKKFVEELAIASGTEMMRASQMRPSTFKDKSKYTRKTKHKKGSEND |
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