NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0214921_10137247

Scaffold Ga0214921_10137247


Overview

Basic Information
Taxon OID3300023174 Open in IMG/M
Scaffold IDGa0214921_10137247 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Lake Lanier, Atlanta, Georgia, United States - LL-1505
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1703
Total Scaffold Genes4 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)3 (75.00%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (75.00%)
Associated Families4

Taxonomy
All Organisms → Viruses → Predicted Viral(Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Lanier, Atlanta, Georgia, United States

Source Dataset Sampling Location
Location NameUSA: Georgia
CoordinatesLat. (o)34.2611Long. (o)-83.95Alt. (m)Depth (m)2
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F010398Metagenome304Y
F013084Metagenome274Y
F018927Metagenome232Y
F043399Metagenome156N

Sequences

Protein IDFamilyRBSSequence
Ga0214921_101372471F010398AGGAGMEISIQGIAKVNYELVIDEDAFNDACEECGLDPANFKKFTKDDWDVLNPHLVQAVVDNESDIDYTEIHVESSVFADTLTIDDSDNMTTVYYDKNRKTDSFEIL
Ga0214921_101372472F043399N/AMLLDDYPIVIWTIVKKNNNYILLDSCGVEVFRRKENRKKEIYQYCEDNGIDFQEEF
Ga0214921_101372473F018927GAGGMNKHIEITRHLTVDGTTTYYVVEKSKNSSSIIWNGTSKQAAYQVAYRNARKENTPLYDTIYKAEFDRNGVKHIIPIGNELLEVNN
Ga0214921_101372474F013084GGAMSILGLMEETKNIVLQRGHNIKNWLVLGNDCYALECADCKKTVMIKEHPLPNEIKVSGEAVAVNCVKPVKEKKVRKK

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