Scaffold Ga0214921_10122660

Overview

Basic Information

• Taxon OID: 3300023174
• Scaffold ID: Ga0214921_10122660
• Source Dataset Name: Freshwater microbial communities from Lake Lanier, Atlanta, Georgia, United States - LL-1505
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1860
• Total Scaffold Genes: 5
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 4 (80.00%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (50.00%)
• Associated Families: 2

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Lanier, Atlanta, Georgia, United States

Source Dataset Sampling Location

• Location Name: USA: Georgia
• Coordinates
  • Lat. (^o): 34.2611
  • Long. (^o): -83.95
  • Depth (m): 2

Associated Families

Family	Category	Number of Sequences	3D Structure?
F010448	Metagenome / Metatranscriptome	303	Y
F102506	Metagenome / Metatranscriptome	101	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0214921_101226601	F102506	N/A	MAKKVSKTFTASLNKNDVKGGAWMAVVTVTTEGIDGADVLNMAAWANASAGKRWIKEQVQSLTPRKSVKMVAGDKVDAKNKPVTFTGSVAFKA
Ga0214921_101226604	F010448	GAG	MKNGDISNVSSPQVICVTDVVIGLTEEETKRLLSTKVTYKVGKINLQEANKLWILANNYGISLELAGFQDLGWTEELLEKAFEKLERQVVNPFNYWQLYESVDELVAGIPYRANLRGVIDVPGRVARYGSAGVQIDNL