NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0214921_10114868

Scaffold Ga0214921_10114868


Overview

Basic Information
Taxon OID3300023174 Open in IMG/M
Scaffold IDGa0214921_10114868 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Lake Lanier, Atlanta, Georgia, United States - LL-1505
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1959
Total Scaffold Genes6 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)6 (100.00%)
Novel Protein Genes5 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)5 (100.00%)
Associated Families5

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Lanier, Atlanta, Georgia, United States

Source Dataset Sampling Location
Location NameUSA: Georgia
CoordinatesLat. (o)34.2611Long. (o)-83.95Alt. (m)Depth (m)2
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000263Metagenome / Metatranscriptome1424Y
F000852Metagenome / Metatranscriptome860Y
F001019Metagenome / Metatranscriptome804Y
F009685Metagenome / Metatranscriptome314Y
F022414Metagenome / Metatranscriptome214Y

Sequences

Protein IDFamilyRBSSequence
Ga0214921_101148681F022414AGGCGGMSKSPEIKVAEQLTNLMDDHWFNATIFGRYLAEQPIYTIDRVMEMVVSVISEQAKMYQLLKVNGTSSEGLLLANELNECIKAYQEVTVISNLKLPKPTVYNIKREEPVKPKHFGYIDIDKNPFDQV
Ga0214921_101148682F000852AGGAMTTKREYLKQQGIAVGVRGRFSGAAKVALAEATAKGITFTAEAPVKKAK
Ga0214921_101148683F009685GAGGMKMSDQYIDEILNRAQKLLWGGSETENIEAHNLISNLIRERIEQVSS
Ga0214921_101148685F001019AGGAMSYEPSLEILEMEYSCSPGGIDLFEVYDKTDIPLSVPIYETESLTDAVLYCYNLGKDFTVKTLAEWNERELAYEA
Ga0214921_101148686F000263AGGMNAEDIGLPPHLQRMVNAGVTGLDIMHGELKNLMLIAEQELADAIEVEEESGEAMDSMDRTRCEGALDTLVSLYKLTYDLSFAIGIRHENIKDGHI
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