Scaffold Ga0214921_10092661

Overview

Basic Information

• Taxon OID: 3300023174
• Scaffold ID: Ga0214921_10092661
• Source Dataset Name: Freshwater microbial communities from Lake Lanier, Atlanta, Georgia, United States - LL-1505
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 2314
• Total Scaffold Genes: 8
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 6 (75.00%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Bacteria → Proteobacteria (Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Lanier, Atlanta, Georgia, United States

Source Dataset Sampling Location

• Location Name: USA: Georgia
• Coordinates
  • Lat. (^o): 34.2611
  • Long. (^o): -83.95
  • Depth (m): 2

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000166	Metagenome / Metatranscriptome	1810	Y
F050321	Metagenome / Metatranscriptome	145	Y
F069849	Metagenome	123	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0214921_100926611	F069849	AGGA	MGNHNQTCTDTEFIKLWSQLESASKMADHLGIAIRAVYLRRRWIEQHYKITLG
Ga0214921_100926612	F000166	N/A	MPNIPNQQDAELFAKSVKKWQQVLSLGDWRIEKGSKPAKQAMASVEFNESARLAVYRLGDFGAEKITPESLDKTALHELLHIFLHDLMTIARDPKSSDEDIEMQEHRVINLLENLIFKDSHGKS
Ga0214921_100926616	F050321	GAG	MITFDKWYPMVQPTHTATQLAFDKAVEKVQEEYRYAVVANKLEFKTREVELELYDKRARQNTIELGSFENRRRFQIFV