NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0214921_10080344

Scaffold Ga0214921_10080344


Overview

Basic Information
Taxon OID3300023174 Open in IMG/M
Scaffold IDGa0214921_10080344 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Lake Lanier, Atlanta, Georgia, United States - LL-1505
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)2583
Total Scaffold Genes8 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)4 (50.00%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (25.00%)
Associated Families4

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Lanier, Atlanta, Georgia, United States

Source Dataset Sampling Location
Location NameUSA: Georgia
CoordinatesLat. (o)34.2611Long. (o)-83.95Alt. (m)Depth (m)2
Location on Map
Zoom:    Powered by OpenStreetMap ©

Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F014486Metagenome / Metatranscriptome262Y
F024954Metagenome / Metatranscriptome203N
F048090Metagenome / Metatranscriptome148N
F086551Metagenome / Metatranscriptome110N

Sequences

Protein IDFamilyRBSSequence
Ga0214921_100803442F014486AGGAMTISNILKENLESFYPWSDSDNPPLDTNKSFVEKQREIDEVFEGWRASM
Ga0214921_100803445F048090N/AMTNEITSLATETCEEVYADANAFFDYINSNDAVNAMLDALSGVYSSSETIVEVK
Ga0214921_100803446F024954N/AMIDYRYMKNTIETLEVGKYYQIDNHIGVCELYRNKKQLQRITTVGIVTHFYDEMPEVKMTPELLKECEARKNGTMNFIGDFNASSKYKGD
Ga0214921_100803447F086551N/AMITINPELYENKNICRYGHEKLLVKIFPSTIGWKTKTATAEILEGEDKGKWTTIYMRKGMYPVDAQ
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