Basic Information | |
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Taxon OID | 3300023174 Open in IMG/M |
Scaffold ID | Ga0214921_10066932 Open in IMG/M |
Source Dataset Name | Freshwater microbial communities from Lake Lanier, Atlanta, Georgia, United States - LL-1505 |
Source Dataset Category | Metagenome |
Source Dataset Use Policy | Open |
Sequencing Center | DOE Joint Genome Institute (JGI) |
Sequencing Status | Permanent Draft |
Scaffold Components | |
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Scaffold Length (bps) | 2972 |
Total Scaffold Genes | 11 (view) |
Total Scaffold Genes with Ribosome Binding Sites (RBS) | 6 (54.55%) |
Novel Protein Genes | 5 (view) |
Novel Protein Genes with Ribosome Binding Sites (RBS) | 4 (80.00%) |
Associated Families | 5 |
Taxonomy | |
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Not Available | (Source: ) |
Source Dataset Ecosystem |
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Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Lanier, Atlanta, Georgia, United States |
Source Dataset Sampling Location | ||||||||
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Location Name | USA: Georgia | |||||||
Coordinates | Lat. (o) | 34.2611 | Long. (o) | -83.95 | Alt. (m) | Depth (m) | 2 | Location on Map |
Zoom: | Powered by OpenStreetMap © |
Family | Category | Number of Sequences | 3D Structure? |
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F003688 | Metagenome / Metatranscriptome | 473 | Y |
F006885 | Metagenome / Metatranscriptome | 362 | Y |
F018928 | Metagenome / Metatranscriptome | 232 | Y |
F028423 | Metagenome / Metatranscriptome | 191 | Y |
F045545 | Metagenome / Metatranscriptome | 152 | Y |
Protein ID | Family | RBS | Sequence |
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Ga0214921_1006693210 | F003688 | GGAG | MYTDTMRKAVHSITPPKSFGVEIIDNEHFLTVKLDERKFLHMGHDDKISALQYVVKLKKALEECGAIVLITREAIK |
Ga0214921_1006693211 | F045545 | GAGG | MIKQISLFFICKIKSHNLINAGACPFTGKNYAACLRCGVTVTK |
Ga0214921_100669325 | F028423 | AGTAGG | MENLEKNELIQLIGFYKQKLSDVELESLKLQLEVNKLNSMVLSLSQGPVKKTK |
Ga0214921_100669326 | F006885 | N/A | MKYLLVIGLTLLSYWSIIKISNKRRMIFLNKNKYRQSSIYEMVKDVVPKQMFDKPKVITQSQKHIQKNMLKVVIANGSAYWILNNVFYTANAINGRVDEETIKPLDIENMPTKELNKMLSILDDLKQGVGPNDSSSTGNKGI |
Ga0214921_100669328 | F018928 | AGGAG | MIIKSLNTMEKIINKNKNLLWRGWDVIDLKESDVAKTSPMGIRIKNKWYLHRIYKPGRNGWDIPNKYKD |
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