Scaffold Ga0214921_10064925

Overview

Basic Information

• Taxon OID: 3300023174
• Scaffold ID: Ga0214921_10064925
• Source Dataset Name: Freshwater microbial communities from Lake Lanier, Atlanta, Georgia, United States - LL-1505
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 3042
• Total Scaffold Genes: 9
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 8 (88.89%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (75.00%)
• Associated Families: 4

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Lanier, Atlanta, Georgia, United States

Source Dataset Sampling Location

• Location Name: USA: Georgia
• Coordinates
  • Lat. (^o): 34.2611
  • Long. (^o): -83.95
  • Depth (m): 2

Associated Families

Family	Category	Number of Sequences	3D Structure?
F011484	Metagenome	290	Y
F042747	Metagenome / Metatranscriptome	157	Y
F048091	Metagenome	148	Y
F094887	Metagenome	105	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0214921_100649256	F011484	GGAGG	MKDLEQFLNVEAEWVLERLSTGTESNDRNYYQGRLDQLAQVRRFLGQPQIMRERASK
Ga0214921_100649257	F048091	N/A	MIEHHFIIKYSKEGGWEWDTDTEEDRYPDGTVWNEEAQEWTNGYIGWNEEKDEGEYLDDDDLVGEQLGAILEIANSASKVI
Ga0214921_100649258	F042747	GGAG	MLGYKYEDIQGFGSTLKLAELMAIDMGEAEVREGLLKIWDFFEGLLAEGYVEGEDE
Ga0214921_100649259	F094887	GGAGG	MEKELKEIDEALTNLWWSAEISDNAKLWWNDHYKEIME