Scaffold Ga0214921_10055399

Overview

Basic Information

• Taxon OID: 3300023174
• Scaffold ID: Ga0214921_10055399
• Source Dataset Name: Freshwater microbial communities from Lake Lanier, Atlanta, Georgia, United States - LL-1505
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 3422
• Total Scaffold Genes: 10
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 7 (70.00%)
• Novel Protein Genes: 5
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (40.00%)
• Associated Families: 5

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Lanier, Atlanta, Georgia, United States

Source Dataset Sampling Location

• Location Name: USA: Georgia
• Coordinates
  • Lat. (^o): 34.2611
  • Long. (^o): -83.95
  • Depth (m): 2

Associated Families

Family	Category	Number of Sequences	3D Structure?
F012455	Metagenome / Metatranscriptome	280	Y
F015434	Metagenome / Metatranscriptome	254	Y
F023275	Metagenome / Metatranscriptome	210	Y
F070095	Metagenome / Metatranscriptome	123	Y
F079590	Metagenome	115	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0214921_1005539910	F079590	N/A	YQTLDAMISSVVDNSAKYYVCLAKSEEDWSSVPAENEKKVYYLFVFDSQTLIYDSGVWNKVQTKSGGYNYVMESIGMSARINTSMSSQLWTSVNESLIGAPTKLEIL
Ga0214921_100553993	F012455	N/A	MLKEIKNKIIRIQELRRSNAATAIPSKKKYSRKIKHKNKLQ
Ga0214921_100553996	F070095	AGGAGG	MEFYANLDYISFYINNLYPSGVAIEIPTWLLVGSIGLIWSIRQWKK
Ga0214921_100553997	F023275	N/A	MAILDNLEASMADDDGMPSQKVTNAIKEMTEDPEYDKLMERLKYMEDNGI
Ga0214921_100553998	F015434	GGA	MESKYPDSWNRHTPKGMNIVDETTKSTKCCDTCECDQTQEEKFNKLMETQSSFEE