Scaffold Ga0214921_10055340

Overview

Basic Information

• Taxon OID: 3300023174
• Scaffold ID: Ga0214921_10055340
• Source Dataset Name: Freshwater microbial communities from Lake Lanier, Atlanta, Georgia, United States - LL-1505
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 3426
• Total Scaffold Genes: 10
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 8 (80.00%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (75.00%)
• Associated Families: 4

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Lanier, Atlanta, Georgia, United States

Source Dataset Sampling Location

• Location Name: USA: Georgia
• Coordinates
  • Lat. (^o): 34.2611
  • Long. (^o): -83.95
  • Depth (m): 2

Associated Families

Family	Category	Number of Sequences	3D Structure?
F003688	Metagenome / Metatranscriptome	473	Y
F010599	Metagenome / Metatranscriptome	301	Y
F032149	Metagenome	180	Y
F045545	Metagenome / Metatranscriptome	152	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0214921_100553402	F010599	GGAG	MEMMFLVFFATLSFSFGLSYLATFNKLKKSNLLLAELFIKNRALEELNHQANNGINMSDDTIHKENFIKFLSDSRDWAFEYIEKSQQAIKEVSDELKIKGLDNYSDKLLALLPEKDSK
Ga0214921_100553404	F032149	GGAG	MKKKIIILILSIVSALVAVSLFFASRLSQLSDLDLFDIEEDD
Ga0214921_100553405	F045545	GGAGG	MIKQIALFFICKIKSHNFIDAGSCPFTGKSYNVCTRCGATITK
Ga0214921_100553406	F003688	N/A	MYTDAMRMAVHSIIPPKGFGVEIIDNEHFLTVKLDERKFLHMVHDDKISAFQYVVKLKKALEECGAIVLVTREAIK