NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0214921_10053407

Scaffold Ga0214921_10053407


Overview

Basic Information
Taxon OID3300023174 Open in IMG/M
Scaffold IDGa0214921_10053407 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Lake Lanier, Atlanta, Georgia, United States - LL-1505
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)3517
Total Scaffold Genes15 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)9 (60.00%)
Novel Protein Genes5 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (60.00%)
Associated Families5

Taxonomy
All Organisms → Viruses → Predicted Viral(Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Lanier, Atlanta, Georgia, United States

Source Dataset Sampling Location
Location NameUSA: Georgia
CoordinatesLat. (o)34.2611Long. (o)-83.95Alt. (m)Depth (m)2
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F026209Metagenome / Metatranscriptome198Y
F046819Metagenome / Metatranscriptome150N
F047479Metagenome / Metatranscriptome149N
F080837Metagenome / Metatranscriptome114N
F102437Metagenome / Metatranscriptome101N

Sequences

Protein IDFamilyRBSSequence
Ga0214921_1005340711F026209N/AMNKEITYEMYDDNAGEWRQVTEPAVGGIKWQKRESLGGETQSAYYDHSFYKVPFYGPYDQGRIHRALNRLYPARFNKFGGYSTVSAVEKLDDQHIKVEMCYHIGD
Ga0214921_1005340712F102437AGGAGMTSKLRAFEDTVLSVREPRELKGSLICSIQDSDIPTLDKRKLIVAIDRCMTIKDIQRLFYNALLKYEGCGVL
Ga0214921_100534073F046819AGGAGGMVNNFKPYTQTDVVSFYKELVKRWADDQLDQLHEYPITKRKQMLEELTQCSLEVFREDILEEIRSRKISYLVD
Ga0214921_100534074F047479AGGAGMKNKYLQIDLYNGKSKWITKKDFLNYTVGDEYDGKDSRGYYMNYRLADGTVEKEYYNWKDNWESIKRTNTHTVYKGEECLLIDFSNKGTK
Ga0214921_100534079F080837N/AMCMMNKKTNNKKHEFFPKMMTTQVLKPYLKEAKRVGYTVSGSVKDGFIAVVTDACEQHPAGEVVMRGVKKPGVNVWIMGFNTLYWQEPTIAECLAESKWYAEMEGASK
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