NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0214921_10047618

Scaffold Ga0214921_10047618


Overview

Basic Information
Taxon OID3300023174 Open in IMG/M
Scaffold IDGa0214921_10047618 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Lake Lanier, Atlanta, Georgia, United States - LL-1505
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)3830
Total Scaffold Genes10 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)8 (80.00%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Associated Families3

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Lanier, Atlanta, Georgia, United States

Source Dataset Sampling Location
Location NameUSA: Georgia
CoordinatesLat. (o)34.2611Long. (o)-83.95Alt. (m)Depth (m)2
Location on Map
Zoom:    Powered by OpenStreetMap ©

Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F015434Metagenome / Metatranscriptome254Y
F023275Metagenome / Metatranscriptome210Y
F047494Metagenome149Y

Sequences

Protein IDFamilyRBSSequence
Ga0214921_100476182F015434GGAMESKYPNSWNRHTPKGMNLVDETTKSTKCCDTCECGQTEEQKFNKLMETQTSFEE
Ga0214921_100476183F023275N/AMAILDNLEYSMADDDGMPIKDDGKPSQKVTDAIKEMLEDPEYNKLMERLKYMEDNGI
Ga0214921_100476188F047494AGGAMNSVINKVCKHTANELAISIVNDMKYSFCENCEQNIYSHYISDNDFMSYWSSWKVGK

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