NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0214921_10046493

Scaffold Ga0214921_10046493


Overview

Basic Information
Taxon OID3300023174 Open in IMG/M
Scaffold IDGa0214921_10046493 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Lake Lanier, Atlanta, Georgia, United States - LL-1505
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)3897
Total Scaffold Genes14 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)4 (28.57%)
Novel Protein Genes5 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (20.00%)
Associated Families5

Taxonomy
All Organisms → cellular organisms → Archaea → DPANN group → Candidatus Pacearchaeota → Candidatus Pacearchaeota archaeon(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Lanier, Atlanta, Georgia, United States

Source Dataset Sampling Location
Location NameUSA: Georgia
CoordinatesLat. (o)34.2611Long. (o)-83.95Alt. (m)Depth (m)2
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F016774Metagenome / Metatranscriptome244Y
F044916Metagenome / Metatranscriptome153Y
F049419Metagenome / Metatranscriptome146Y
F064403Metagenome / Metatranscriptome128N
F096610Metagenome / Metatranscriptome104N

Sequences

Protein IDFamilyRBSSequence
Ga0214921_1004649311F096610N/AMANRPKTYFVKMTDNTNGTFTISEAKVLDKVNQHTRHWRSFDKRKLTSKLRVADILTK
Ga0214921_1004649314F016774N/AMKQKVYYQNGEKESKKRVIPNMPPKEKKMTLSTDHLESLNYWRDQLLGLEKSYYSKDPEKERTCRNMINKYLDDVLTYNKNIKEKSKNKV
Ga0214921_100464933F064403GGAMINPRAKILSDLKRAYLKEHPITLVDRILGYLNNLTDFQLCQLYSEKYETNPKYMAEQFEFKF
Ga0214921_100464934F044916N/AMGRKKVDKSRIEKGIEKEEKTFALMAKKIIDAIKDEKELRAFAKISLEILYKDNPNLFADHAKLKLNKK
Ga0214921_100464938F049419N/AMKLPKLDLLNLATTYIFFGLIYGTIITLTWNYLFESITLVHLSILQGFGIHLIARILFGNTNTNYISNFYNQQTPDLNKIDAYLKEMQADLDKEADEVERQYEDLDKKD
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