Scaffold Ga0214921_10042049

Overview

Basic Information

• Taxon OID: 3300023174
• Scaffold ID: Ga0214921_10042049
• Source Dataset Name: Freshwater microbial communities from Lake Lanier, Atlanta, Georgia, United States - LL-1505
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 4198
• Total Scaffold Genes: 19
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 13 (68.42%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (75.00%)
• Associated Families: 4

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Lanier, Atlanta, Georgia, United States

Source Dataset Sampling Location

• Location Name: USA: Georgia
• Coordinates
  • Lat. (^o): 34.2611
  • Long. (^o): -83.95
  • Depth (m): 2

Associated Families

Family	Category	Number of Sequences	3D Structure?
F001280	Metagenome / Metatranscriptome	732	Y
F007921	Metagenome / Metatranscriptome	342	Y
F078716	Metagenome / Metatranscriptome	116	N
F088905	Metagenome / Metatranscriptome	109	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0214921_1004204914	F078716	N/A	MSDINGTGTPTPPNSEPSGAVTSRETPRKYPKQGTRSGIKIDQNRHGIRRETSLDPKPQKKGRPKKV
Ga0214921_1004204915	F001280	GAGG	MCIECGCESLGSETGIASVTITDVSRDGESGLTLDMTSTPEQTRQFINE
Ga0214921_1004204916	F088905	GGA	MSDNTKDIDTTPAVEVKEEIKAEPKAEAKTESAPSADSTVDYWANAWANRGV
Ga0214921_100420499	F007921	AGGA	MIDWLVNRIFRWDSLRHAIFDEVHMYDELDKRIKEHKDEEPTNLTWAEGDTWYGWTYNSNAKRYYFDDIGNTSLMGLWEDQWLREADESSNV