Basic Information | |
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Taxon OID | 3300023174 Open in IMG/M |
Scaffold ID | Ga0214921_10041514 Open in IMG/M |
Source Dataset Name | Freshwater microbial communities from Lake Lanier, Atlanta, Georgia, United States - LL-1505 |
Source Dataset Category | Metagenome |
Source Dataset Use Policy | Open |
Sequencing Center | DOE Joint Genome Institute (JGI) |
Sequencing Status | Permanent Draft |
Scaffold Components | |
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Scaffold Length (bps) | 4236 |
Total Scaffold Genes | 11 (view) |
Total Scaffold Genes with Ribosome Binding Sites (RBS) | 3 (27.27%) |
Novel Protein Genes | 4 (view) |
Novel Protein Genes with Ribosome Binding Sites (RBS) | 2 (50.00%) |
Associated Families | 4 |
Taxonomy | |
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All Organisms → cellular organisms → Archaea → unclassified Archaea → archaeon | (Source: UniRef50) |
Source Dataset Ecosystem |
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Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Lanier, Atlanta, Georgia, United States |
Source Dataset Sampling Location | ||||||||
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Location Name | USA: Georgia | |||||||
Coordinates | Lat. (o) | 34.2611 | Long. (o) | -83.95 | Alt. (m) | Depth (m) | 2 | Location on Map |
Zoom: | Powered by OpenStreetMap © |
Family | Category | Number of Sequences | 3D Structure? |
---|---|---|---|
F000962 | Metagenome / Metatranscriptome | 820 | Y |
F002455 | Metagenome / Metatranscriptome | 557 | Y |
F012669 | Metagenome / Metatranscriptome | 278 | Y |
F026559 | Metagenome / Metatranscriptome | 197 | N |
Protein ID | Family | RBS | Sequence |
---|---|---|---|
Ga0214921_1004151410 | F000962 | N/A | MNIHVPEEIKIKYPQYEFRGKQREINNRIVIEAYNPVTEQTFYYSFEEDFFWIAGQIPDYKLQKV |
Ga0214921_100415146 | F002455 | AGG | MTDNRTYYYDIYGKMEPDYESMAAYLLDESILFVGSAVDKCDKQECTGLFININDYFAPAADSEPVTYSELPKLYEMYKEKKYDGVSQFVADKRGIPNICWKDEGSDFKKRVKDSQ |
Ga0214921_100415147 | F026559 | AGGA | MKYEVIERFAWYFPDNDIEVSVYRKQSYFRRFIMWLFFDAELRTYYKTIDTFQAKTFQSKKD |
Ga0214921_100415148 | F012669 | N/A | MSEQAYINLKDAVKRPIFDVKNINRENPRFKQMVDSYQKWNQDDYFTEHRSTYENDIIECLERYDLDGFALAQYLSEYKYIEPDSELVHILEDVTFVKSSLETEMLNQWVKENFLTIPDDVVGKKVNVKQGIRKYENHYITGIKPETYQVTVSDKIDKNGGYIVGFENVTFL |
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