NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0214921_10041514

Scaffold Ga0214921_10041514


Overview

Basic Information
Taxon OID3300023174 Open in IMG/M
Scaffold IDGa0214921_10041514 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Lake Lanier, Atlanta, Georgia, United States - LL-1505
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)4236
Total Scaffold Genes11 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)3 (27.27%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (50.00%)
Associated Families4

Taxonomy
All Organisms → cellular organisms → Archaea → unclassified Archaea → archaeon(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Lanier, Atlanta, Georgia, United States

Source Dataset Sampling Location
Location NameUSA: Georgia
CoordinatesLat. (o)34.2611Long. (o)-83.95Alt. (m)Depth (m)2
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000962Metagenome / Metatranscriptome820Y
F002455Metagenome / Metatranscriptome557Y
F012669Metagenome / Metatranscriptome278Y
F026559Metagenome / Metatranscriptome197N

Sequences

Protein IDFamilyRBSSequence
Ga0214921_1004151410F000962N/AMNIHVPEEIKIKYPQYEFRGKQREINNRIVIEAYNPVTEQTFYYSFEEDFFWIAGQIPDYKLQKV
Ga0214921_100415146F002455AGGMTDNRTYYYDIYGKMEPDYESMAAYLLDESILFVGSAVDKCDKQECTGLFININDYFAPAADSEPVTYSELPKLYEMYKEKKYDGVSQFVADKRGIPNICWKDEGSDFKKRVKDSQ
Ga0214921_100415147F026559AGGAMKYEVIERFAWYFPDNDIEVSVYRKQSYFRRFIMWLFFDAELRTYYKTIDTFQAKTFQSKKD
Ga0214921_100415148F012669N/AMSEQAYINLKDAVKRPIFDVKNINRENPRFKQMVDSYQKWNQDDYFTEHRSTYENDIIECLERYDLDGFALAQYLSEYKYIEPDSELVHILEDVTFVKSSLETEMLNQWVKENFLTIPDDVVGKKVNVKQGIRKYENHYITGIKPETYQVTVSDKIDKNGGYIVGFENVTFL

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