NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0214921_10040344

Scaffold Ga0214921_10040344


Overview

Basic Information
Taxon OID3300023174 Open in IMG/M
Scaffold IDGa0214921_10040344 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Lake Lanier, Atlanta, Georgia, United States - LL-1505
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)4324
Total Scaffold Genes12 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)3 (25.00%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (33.33%)
Associated Families3

Taxonomy
All Organisms → cellular organisms → Archaea → unclassified Archaea → archaeon(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Lanier, Atlanta, Georgia, United States

Source Dataset Sampling Location
Location NameUSA: Georgia
CoordinatesLat. (o)34.2611Long. (o)-83.95Alt. (m)Depth (m)2
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F009264Metagenome / Metatranscriptome320N
F009682Metagenome / Metatranscriptome314Y
F010397Metagenome / Metatranscriptome304Y

Sequences

Protein IDFamilyRBSSequence
Ga0214921_1004034411F009264GAGMDQEVDHLTKIGFGAKILDAYEMENGFVAVVVDWNSKTDSHKLKYASQGCITYSSDKIVGVDLEFKNYPYKDDDCEMYPIIWVKLDYNNSNKKMDYVCFQNLKYQAIVYFAPYDWNTTRNSKKIKF
Ga0214921_100403446F009682N/AMEKDLYLKDKYVIESDDLKFDGKNIIIPSYYASVVYDYLDNVNIKEMNLNDADMHDYLVFCSFFEAIIDYKADKGGN
Ga0214921_100403448F010397N/AMNISEFERGKPVLTMHKINDLIKRIEEEKHKTEKLYKDRVESLNTIHNLLISVKDSFKKG

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