Scaffold Ga0214921_10040344

Overview

Basic Information

• Taxon OID: 3300023174
• Scaffold ID: Ga0214921_10040344
• Source Dataset Name: Freshwater microbial communities from Lake Lanier, Atlanta, Georgia, United States - LL-1505
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 4324
• Total Scaffold Genes: 12
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 3 (25.00%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (33.33%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Archaea → unclassified Archaea → archaeon (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Lanier, Atlanta, Georgia, United States

Source Dataset Sampling Location

• Location Name: USA: Georgia
• Coordinates
  • Lat. (^o): 34.2611
  • Long. (^o): -83.95
  • Depth (m): 2

Associated Families

Family	Category	Number of Sequences	3D Structure?
F009264	Metagenome / Metatranscriptome	320	N
F009682	Metagenome / Metatranscriptome	314	Y
F010397	Metagenome / Metatranscriptome	304	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0214921_1004034411	F009264	GAG	MDQEVDHLTKIGFGAKILDAYEMENGFVAVVVDWNSKTDSHKLKYASQGCITYSSDKIVGVDLEFKNYPYKDDDCEMYPIIWVKLDYNNSNKKMDYVCFQNLKYQAIVYFAPYDWNTTRNSKKIKF
Ga0214921_100403446	F009682	N/A	MEKDLYLKDKYVIESDDLKFDGKNIIIPSYYASVVYDYLDNVNIKEMNLNDADMHDYLVFCSFFEAIIDYKADKGGN
Ga0214921_100403448	F010397	N/A	MNISEFERGKPVLTMHKINDLIKRIEEEKHKTEKLYKDRVESLNTIHNLLISVKDSFKKG