NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0214921_10039312

Scaffold Ga0214921_10039312


Overview

Basic Information
Taxon OID3300023174 Open in IMG/M
Scaffold IDGa0214921_10039312 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Lake Lanier, Atlanta, Georgia, United States - LL-1505
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)4407
Total Scaffold Genes15 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)14 (93.33%)
Novel Protein Genes7 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)7 (100.00%)
Associated Families7

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Lanier, Atlanta, Georgia, United States

Source Dataset Sampling Location
Location NameUSA: Georgia
CoordinatesLat. (o)34.2611Long. (o)-83.95Alt. (m)Depth (m)2
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F006618Metagenome368Y
F006842Metagenome363Y
F011646Metagenome / Metatranscriptome288Y
F011756Metagenome / Metatranscriptome287Y
F027417Metagenome194Y
F029021Metagenome189Y
F072283Metagenome / Metatranscriptome121N

Sequences

Protein IDFamilyRBSSequence
Ga0214921_100393122F011646AGGAGVSNVVELPNRNKITVVFYEVSDAQNIAIWGGESPSEALKWYRNSPLDSKIWVSEWLTDDEDAREVSPQIEITSIVLSTIANCMERWSK
Ga0214921_100393123F011756GAGMVYVKLLPIDLRGLMSEPRYLSGDEFALSGGYEELINCKECAVEYDRTEYQSDTCSDCEDKRVMREKESK
Ga0214921_100393125F029021GAGGMKDLCQFCGWEIARVDWYHRYNGKLICDNCVMDTMSEREREEVR
Ga0214921_100393126F006842GAGGMKAKPVICGDCLILLSDCAHGANYLQELKTSAERLVQLAKEREEMK
Ga0214921_100393127F072283GGAGMNTMQDLIEAIKPILPNALVIDTDTGILIETNLELGLGGLLQTIEREGE
Ga0214921_100393128F006618GAGGMSKMKQHLEKQIVIKGKEHEETGWKRYVYFEYEGNEYELTLFYDEFTGYDTYWRVPSKRPDWVVEWDSEAHEGMSFEHYLDDLTWENN
Ga0214921_100393129F027417AGGAGVNGYDYRVIFITDYLTIITQVNLMPDDDNFNNLSSEAYEQAVINGMNNIVDELGQFDETLINNITVSLLLDDEEIEVSK

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