Basic Information | |
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Taxon OID | 3300023174 Open in IMG/M |
Scaffold ID | Ga0214921_10039312 Open in IMG/M |
Source Dataset Name | Freshwater microbial communities from Lake Lanier, Atlanta, Georgia, United States - LL-1505 |
Source Dataset Category | Metagenome |
Source Dataset Use Policy | Open |
Sequencing Center | DOE Joint Genome Institute (JGI) |
Sequencing Status | Permanent Draft |
Scaffold Components | |
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Scaffold Length (bps) | 4407 |
Total Scaffold Genes | 15 (view) |
Total Scaffold Genes with Ribosome Binding Sites (RBS) | 14 (93.33%) |
Novel Protein Genes | 7 (view) |
Novel Protein Genes with Ribosome Binding Sites (RBS) | 7 (100.00%) |
Associated Families | 7 |
Taxonomy | |
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Not Available | (Source: ) |
Source Dataset Ecosystem |
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Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Lanier, Atlanta, Georgia, United States |
Source Dataset Sampling Location | ||||||||
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Location Name | USA: Georgia | |||||||
Coordinates | Lat. (o) | 34.2611 | Long. (o) | -83.95 | Alt. (m) | Depth (m) | 2 | Location on Map |
Zoom: | Powered by OpenStreetMap © |
Family | Category | Number of Sequences | 3D Structure? |
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F006618 | Metagenome | 368 | Y |
F006842 | Metagenome | 363 | Y |
F011646 | Metagenome / Metatranscriptome | 288 | Y |
F011756 | Metagenome / Metatranscriptome | 287 | Y |
F027417 | Metagenome | 194 | Y |
F029021 | Metagenome | 189 | Y |
F072283 | Metagenome / Metatranscriptome | 121 | N |
Protein ID | Family | RBS | Sequence |
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Ga0214921_100393122 | F011646 | AGGAG | VSNVVELPNRNKITVVFYEVSDAQNIAIWGGESPSEALKWYRNSPLDSKIWVSEWLTDDEDAREVSPQIEITSIVLSTIANCMERWSK |
Ga0214921_100393123 | F011756 | GAG | MVYVKLLPIDLRGLMSEPRYLSGDEFALSGGYEELINCKECAVEYDRTEYQSDTCSDCEDKRVMREKESK |
Ga0214921_100393125 | F029021 | GAGG | MKDLCQFCGWEIARVDWYHRYNGKLICDNCVMDTMSEREREEVR |
Ga0214921_100393126 | F006842 | GAGG | MKAKPVICGDCLILLSDCAHGANYLQELKTSAERLVQLAKEREEMK |
Ga0214921_100393127 | F072283 | GGAG | MNTMQDLIEAIKPILPNALVIDTDTGILIETNLELGLGGLLQTIEREGE |
Ga0214921_100393128 | F006618 | GAGG | MSKMKQHLEKQIVIKGKEHEETGWKRYVYFEYEGNEYELTLFYDEFTGYDTYWRVPSKRPDWVVEWDSEAHEGMSFEHYLDDLTWENN |
Ga0214921_100393129 | F027417 | AGGAG | VNGYDYRVIFITDYLTIITQVNLMPDDDNFNNLSSEAYEQAVINGMNNIVDELGQFDETLINNITVSLLLDDEEIEVSK |
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