NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0214921_10039042

Scaffold Ga0214921_10039042


Overview

Basic Information
Taxon OID3300023174 Open in IMG/M
Scaffold IDGa0214921_10039042 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Lake Lanier, Atlanta, Georgia, United States - LL-1505
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)4431
Total Scaffold Genes5 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (20.00%)
Novel Protein Genes1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families1

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Lanier, Atlanta, Georgia, United States

Source Dataset Sampling Location
Location NameUSA: Georgia
CoordinatesLat. (o)34.2611Long. (o)-83.95Alt. (m)Depth (m)2
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F083676Metagenome112Y

Sequences

Protein IDFamilyRBSSequence
Ga0214921_100390424F083676N/AMSKDSGTNRGKYGFDLDINSYSIEDLMEIYKIPKSQKGNVTDDYVKNMTKEIVQQYKNYNSTGIGGDMPFSENYSEDDEYVVFFNEAQKRILQYLRSGVSFINDSNLSSASGKTVENRLVQKFSPSSMLSDGDKLVMMPKDDIRVQNINPNLIATPSIIHEYAKGIINPLERRTIKRIISIDTLFRENHGTTSSADYIWNLPTPINNVLSMKLVSMEFPNIIKMFSESRKNSIFTVNLYNVPQYYVENSVGKTVFINHSETILIADGFYVSSDFGTLMSNYFLSAIKPNKGTVVADLVDISGVPTYVAREPSAYTDASTNQLVYNGLKYLVLEVSDISSRTIIRSRETTDTLPTNTMNPAEPNYRAFAGSYATNRQYSPEFYFELDFNVQEDKSFTDYYKEGGIFIRKLTYETQTINGQPVKVMIDPDPNGNECATTSKQRTHLTSSTLQCYRPRLDPNTGQVTRSNTKMRPLYKNAGWAMGFYKDVYTVKKSMANQMVLDRSASFLPTIYNRYIESESSYGSSVAQYFFLELDDYNRNFTTNTIIAETGGGTHLGNNIIARIPITAPSLNINHANPSDLIFKQRDYFGPVKIEKLHLHLIDKYGETLDIQNNDYSVAIELTTTY
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