NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0214921_10031589

Scaffold Ga0214921_10031589


Overview

Basic Information
Taxon OID3300023174 Open in IMG/M
Scaffold IDGa0214921_10031589 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Lake Lanier, Atlanta, Georgia, United States - LL-1505
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)5162
Total Scaffold Genes12 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)11 (91.67%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (100.00%)
Associated Families2

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Lanier, Atlanta, Georgia, United States

Source Dataset Sampling Location
Location NameUSA: Georgia
CoordinatesLat. (o)34.2611Long. (o)-83.95Alt. (m)Depth (m)2
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F006112Metagenome / Metatranscriptome381Y
F006698Metagenome / Metatranscriptome366Y

Sequences

Protein IDFamilyRBSSequence
Ga0214921_100315892F006698GGAMTRYYDELAVYERNGFDIIVDKSYEDLDPKDCFDDSCFDIKDMYRDIECGNLDWFMLRVRVMVEGIELSSEFLGGCLYKDAREVLTDGTAEDLIDMALTEAKKDVYRLYKKFQDISWELDAQSV
Ga0214921_100315896F006112AGGAGMKQDYTMYIYKRDGRTKTGERLFSTTVWPGRTEEGMRRECNGIYDIYPATKGWRFEYVPTMKTVTNLMSGKEIQIPHDTPRSCDPSSELYWSM

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