Scaffold Ga0214921_10026586

Overview

Basic Information

• Taxon OID: 3300023174
• Scaffold ID: Ga0214921_10026586
• Source Dataset Name: Freshwater microbial communities from Lake Lanier, Atlanta, Georgia, United States - LL-1505
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 5857
• Total Scaffold Genes: 16
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 9 (56.25%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (75.00%)
• Associated Families: 4

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Lanier, Atlanta, Georgia, United States

Source Dataset Sampling Location

• Location Name: USA: Georgia
• Coordinates
  • Lat. (^o): 34.2611
  • Long. (^o): -83.95
  • Depth (m): 2

Associated Families

Family	Category	Number of Sequences	3D Structure?
F017788	Metagenome / Metatranscriptome	238	Y
F020851	Metagenome / Metatranscriptome	221	Y
F034566	Metagenome	174	Y
F054581	Metagenome	139	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0214921_100265863	F020851	GGA	MSKDIVDLAISMTEIDTGIELSPQEREEMKQRILARLEDINLV
Ga0214921_100265864	F054581	AGGA	MCPHCNNKLIPLLYGFVDPKYVDMHKEGLVFLVSTTYHTKNSPTSYCKKCEESFDIKLN
Ga0214921_100265865	F034566	AGG	MRFKLKGIIWGQSALILILILSLLFVGGDLKQARKMTLDQSNYCIKYTSDIIASSRLDLIREQDAHSRTVDKANSVIDDIVNRYNSLVARYNKSNGGTNYDPLNTYSYRIRP
Ga0214921_100265868	F017788	N/A	MKKIIITSLLLTLLMSTTQANAATKPLNTKQNKSACISIKKNYKLDVMSKWSTGSVNDNDLINEINLNVKMLSLKQKLTSGKIKTTIASWITSEKNTKIAITDKNFEAVTAAMNLKISSVSNFDKLCKSIEK