Basic Information | |
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Taxon OID | 3300023174 Open in IMG/M |
Scaffold ID | Ga0214921_10026028 Open in IMG/M |
Source Dataset Name | Freshwater microbial communities from Lake Lanier, Atlanta, Georgia, United States - LL-1505 |
Source Dataset Category | Metagenome |
Source Dataset Use Policy | Open |
Sequencing Center | DOE Joint Genome Institute (JGI) |
Sequencing Status | Permanent Draft |
Scaffold Components | |
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Scaffold Length (bps) | 5952 |
Total Scaffold Genes | 19 (view) |
Total Scaffold Genes with Ribosome Binding Sites (RBS) | 15 (78.95%) |
Novel Protein Genes | 8 (view) |
Novel Protein Genes with Ribosome Binding Sites (RBS) | 5 (62.50%) |
Associated Families | 8 |
Taxonomy | |
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All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Nitrosomonadales → Methylophilaceae → unclassified Methylophilaceae → Methylophilaceae bacterium | (Source: UniRef50) |
Source Dataset Ecosystem |
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Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Lanier, Atlanta, Georgia, United States |
Source Dataset Sampling Location | ||||||||
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Location Name | USA: Georgia | |||||||
Coordinates | Lat. (o) | 34.2611 | Long. (o) | -83.95 | Alt. (m) | Depth (m) | 2 | Location on Map |
Zoom: | Powered by OpenStreetMap © |
Family | Category | Number of Sequences | 3D Structure? |
---|---|---|---|
F000671 | Metagenome / Metatranscriptome | 945 | Y |
F008814 | Metagenome / Metatranscriptome | 327 | Y |
F012975 | Metagenome / Metatranscriptome | 275 | Y |
F014017 | Metagenome / Metatranscriptome | 266 | Y |
F014140 | Metagenome / Metatranscriptome | 265 | Y |
F016396 | Metagenome / Metatranscriptome | 247 | Y |
F073544 | Metagenome / Metatranscriptome | 120 | Y |
F077310 | Metagenome / Metatranscriptome | 117 | Y |
Protein ID | Family | RBS | Sequence |
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Ga0214921_1002602812 | F016396 | GAGG | MRKSERLRLLEMQVVRLEMMVELYTQTLTNLLESQGLQSPSQLDAGKWYKAKLDKLDNE |
Ga0214921_1002602813 | F008814 | AGTAG | MDNKLTVLEEIIKEIGEELYQKWYNGLAIEDRTEETSKAMSTNAGETAVWVIQTFMNKFNAAAEELKPNDSN |
Ga0214921_1002602817 | F014017 | N/A | MDKLTEYLHENHRKKIADEIRYLELPPEWRPSEVIRYIVRIIEKNNG |
Ga0214921_100260282 | F014140 | N/A | MNTYKVKLDVELEVTAFNETDARDYVGDIFNIDDEIKKVNIIKITEKNK |
Ga0214921_100260284 | F012975 | GGA | MLNLTLKGVEVFIERSKTKSQESYWDNYDLLIWKQNPGGFTNLKGIFRKDQWGVTERIAVNEQGIWKLPTKYVKHFK |
Ga0214921_100260287 | F073544 | AGGGGG | VREYYEIIKIVLIHAERTYGSVESLGLYASKVKYQKDGIEIEEVLENDEFTIMDEIVFEHVEESN |
Ga0214921_100260288 | F000671 | GAGG | MEKILCYSCNKTKNKLNVRKSILIPINLLMCETCISSKFEPRWVVILAGRQLGSDAVKEFIIKKKYLGNEIAASELLV |
Ga0214921_100260289 | F077310 | N/A | MTLDANSVIIVIIASILSGMGTALVSGIKESKREKARLVEREQDLLKMDLKDLEIKLYKLEKDLSEWRDKYYSALQELIEVKAELEETLIKLTHIGLHE |
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