Scaffold Ga0214921_10024675

Overview

Basic Information

• Taxon OID: 3300023174
• Scaffold ID: Ga0214921_10024675
• Source Dataset Name: Freshwater microbial communities from Lake Lanier, Atlanta, Georgia, United States - LL-1505
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 6188
• Total Scaffold Genes: 23
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 5 (21.74%)
• Novel Protein Genes: 9
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (22.22%)
• Associated Families: 9

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Lanier, Atlanta, Georgia, United States

Source Dataset Sampling Location

• Location Name: USA: Georgia
• Coordinates
  • Lat. (^o): 34.2611
  • Long. (^o): -83.95
  • Depth (m): 2

Associated Families

Family	Category	Number of Sequences	3D Structure?
F016774	Metagenome / Metatranscriptome	244	Y
F027756	Metagenome / Metatranscriptome	193	N
F036564	Metagenome / Metatranscriptome	169	N
F044916	Metagenome / Metatranscriptome	153	Y
F048121	Metagenome / Metatranscriptome	148	N
F049419	Metagenome / Metatranscriptome	146	Y
F064403	Metagenome / Metatranscriptome	128	N
F078229	Metagenome / Metatranscriptome	116	Y
F096610	Metagenome / Metatranscriptome	104	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0214921_100246751	F048121	N/A	MNTTNTQYTWQVKATTGQLVVAPKSYPTLRGAKIASKRFAN
Ga0214921_1002467513	F044916	N/A	MGKKKVDKSRIEKGLEKEEKTFALMAKKIVDAIKDEKELRTFAKISLEILYKDNPNLFADHAKLKLKKK
Ga0214921_1002467514	F064403	AGAAGG	MINPRSKVLSDLKRAYLKEHPVSLVDRILGYLNNLTDFQLCQLYSEKYETNPKYIAEQFEFKF
Ga0214921_1002467515	F036564	GGAG	MKMGRVCLDLNYIVDMDNQEMVERAIECLYEDLMQGVKYGNITNWIDVIEDKNAKEDMIPEFLLEKEND
Ga0214921_1002467517	F027756	N/A	MKLKDLIDRKILYLNFPINRYAIQEGKVTEISPAEKCIKINNDWHLITNIRIIELFSEKERPPLGFN
Ga0214921_1002467522	F078229	N/A	MSKIKYTYYIEQDKDKDGNLVQGWSIYKTPLVKTIKVKTFKKLKDADDFLNNYESN
Ga0214921_100246754	F016774	N/A	MPPKKNKISFSTEHIASLNHWRDQLLALEKSYYSKDPEKERTIRNMLNKYLDDVLDYNKNIKEKPKNKV
Ga0214921_100246757	F096610	N/A	MANRPKTYFVKMTDNTNGTFTISEAKVLDKVNQHTRHWRSFDKRKLTSKLRSSNLLTK
Ga0214921_100246759	F049419	N/A	MKLPKLNLLDLATTYIFFGLVYGAIVTLTWNYLFEPITFIHLSFLQGFGIHLIARILFGNTNTNYVSNFYSQKSPDLDKIDSYLKEIQADLDKEAEEVERQYEDLDKKD