Basic Information | |
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Taxon OID | 3300023174 Open in IMG/M |
Scaffold ID | Ga0214921_10019032 Open in IMG/M |
Source Dataset Name | Freshwater microbial communities from Lake Lanier, Atlanta, Georgia, United States - LL-1505 |
Source Dataset Category | Metagenome |
Source Dataset Use Policy | Open |
Sequencing Center | DOE Joint Genome Institute (JGI) |
Sequencing Status | Permanent Draft |
Scaffold Components | |
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Scaffold Length (bps) | 7467 |
Total Scaffold Genes | 30 (view) |
Total Scaffold Genes with Ribosome Binding Sites (RBS) | 17 (56.67%) |
Novel Protein Genes | 5 (view) |
Novel Protein Genes with Ribosome Binding Sites (RBS) | 4 (80.00%) |
Associated Families | 5 |
Taxonomy | |
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All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage | (Source: UniRef50) |
Source Dataset Ecosystem |
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Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Lanier, Atlanta, Georgia, United States |
Source Dataset Sampling Location | ||||||||
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Location Name | USA: Georgia | |||||||
Coordinates | Lat. (o) | 34.2611 | Long. (o) | -83.95 | Alt. (m) | Depth (m) | 2 | Location on Map |
Zoom: | Powered by OpenStreetMap © |
Family | Category | Number of Sequences | 3D Structure? |
---|---|---|---|
F030987 | Metagenome / Metatranscriptome | 183 | N |
F031363 | Metagenome | 182 | Y |
F035185 | Metagenome | 172 | N |
F041021 | Metagenome / Metatranscriptome | 160 | N |
F045580 | Metagenome / Metatranscriptome | 152 | Y |
Protein ID | Family | RBS | Sequence |
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Ga0214921_1001903211 | F045580 | N/A | MNKMNILLVLLIAVIIIGPIATIWALNTLFPVLAIPLTLDTWCAAVILGGIFRGDGISFKGK |
Ga0214921_1001903213 | F041021 | GGA | MPKFIVETLQTFQEVHVIEAENEEQAKKISEQSDYNASIYLGQTNVDVQKFSESKLKRWKEREPYFFDGYTVVEDGSLVYRKPDGSLNGNMPKIEINL |
Ga0214921_100190323 | F030987 | AGGA | MILRIIAHLPLNLIGQCNMKMQTAIKQIQKEADFQGLTFVEVLEDIQKYGKMLYSEKTMDAYQTVISNGQFFNESPIDIALYNKDMMEME |
Ga0214921_100190327 | F035185 | AGAAGG | MSFDFDDDGEFSVNYEKVLYSEEFLPVTRLLAADLIKTQYMPIGDFLKKLSNDTLAELTEISENENDPHFEEMILITEMLAAAEGTNIGGTPEVHQRLNLFITWLVVESLRRKGLVRVFYENISFGEDMIDKIIVEKIK |
Ga0214921_100190329 | F031363 | AGGAG | VKPSEYDGFYFLPNDEDGLTFHYFDFEGELANGKKYESKNEIGDLWQIAFFTKNEEGYPVYNDSFEAIFGNPEMYVKNLCGAGLYGCIVRKTDKSVKWFEQYLNKVKNRVTIMILKTD |
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