NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0214921_10015606

Scaffold Ga0214921_10015606


Overview

Basic Information
Taxon OID3300023174 Open in IMG/M
Scaffold IDGa0214921_10015606 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Lake Lanier, Atlanta, Georgia, United States - LL-1505
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)8640
Total Scaffold Genes13 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)8 (61.54%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (25.00%)
Associated Families4

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Lanier, Atlanta, Georgia, United States

Source Dataset Sampling Location
Location NameUSA: Georgia
CoordinatesLat. (o)34.2611Long. (o)-83.95Alt. (m)Depth (m)2
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F004276Metagenome / Metatranscriptome445Y
F014851Metagenome / Metatranscriptome259Y
F058737Metagenome134N
F072327Metagenome / Metatranscriptome121N

Sequences

Protein IDFamilyRBSSequence
Ga0214921_1001560610F072327N/AMSRETIVLLSNITDDSQPSTWQYGEKHIGAGYYKNGNGVHTMTFELNNFKGSIKVQATLDLNPGVNDWVDVVLDSSDTVLTAIDSTPVTSNAACTFIGKFVFIRVAYQLEQGTITEVRYN
Ga0214921_1001560611F058737N/AMLQLKTKSTSRKFYNKWLYKISLLINGCVVFRTQPISNIKDWLENSNSDSGYHYDNWRRAAANKEIISSVCDFLSGYNDDVYALRVERNRLDVYTNDPEFYEKLSLASEDYLVHRFEPNINNLDILNNSQNSITVDKLPKGRYRYRVYLLPHKMAKDREGKQKYLNWLKSQSPRITCTPAIERWFLTTDWNWDRRYVLVEDESTLLMMKLRGSEVVGRVYNFIVCDK
Ga0214921_100156062F014851N/AMKIREIFETATAGATSAGNVAIGAVYKNKPGKTAKNKDGTAKNALDLKGTNLLTGGSLVK
Ga0214921_100156068F004276GGAGMLLKEMFSAIGAPKDEQQEIDWLDDLKFFIDNDSKMLDQYFFPAVKRHREHRGNPNVFKVYIRPLEKCMGHYCDKYDIDDAEQKFPKDKLIDLAKRIADEQEKYIEKGDYD

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