Scaffold Ga0214921_10014772

Overview

Basic Information

• Taxon OID: 3300023174
• Scaffold ID: Ga0214921_10014772
• Source Dataset Name: Freshwater microbial communities from Lake Lanier, Atlanta, Georgia, United States - LL-1505
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 8992
• Total Scaffold Genes: 22
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 16 (72.73%)
• Novel Protein Genes: 6
• Novel Protein Genes with Ribosome Binding Sites (RBS): 4 (66.67%)
• Associated Families: 6

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Lanier, Atlanta, Georgia, United States

Source Dataset Sampling Location

• Location Name: USA: Georgia
• Coordinates
  • Lat. (^o): 34.2611
  • Long. (^o): -83.95
  • Depth (m): 2

Associated Families

Family	Category	Number of Sequences	3D Structure?
F020540	Metagenome / Metatranscriptome	223	Y
F021534	Metagenome	218	Y
F030669	Metagenome / Metatranscriptome	184	Y
F044496	Metagenome / Metatranscriptome	154	Y
F047055	Metagenome / Metatranscriptome	150	N
F071237	Metagenome / Metatranscriptome	122	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0214921_1001477217	F020540	N/A	MSKIQQFGRVYETFDPSSKKHRKIFHDVLRYRTWGRSPICFWAEDDSSGSNSLMDQCIKAMGKYYIEKEFGVLIDDDPFAGGELTRTRPNPCPHIRKKLK
Ga0214921_1001477218	F021534	AGG	MKTETENEVVHFLQELLHPEGFGWSVTAEVRKESKRLLIMIESESNEQDSAIRQSV
Ga0214921_100147722	F030669	N/A	MYYIYGAVGSKATEKAELLLTICRRQYKLFILGEDYTVAQLQKLVPNTTFVPHIYHNLNYIGGINELHDYLYDELRIEKS
Ga0214921_100147723	F047055	GAG	MKKACTLHSIITTLFLCNVAQAGVVLVEDSSTKDGYYMAKVINVKPIIEKVPYMTTKNYCQKQYGTTHYSGPGTNTLVLGMTPPLSTPVCKLVNEQAYQNVVKGYQVTYDFKGTLKTAFLNNEPSEYLQVYNAP
Ga0214921_100147724	F044496	GAGG	MKKILAVAVTALIATCAFADDIVNYQIVPVIKVDPIGSMRAISMPRMSCTNVEPVEGVGAPVQTQQQKCVSYSDREFRYNVTAFNVTFEYQGQIRTVKMNYDPGNAIRIKTVTRVYAVE
Ga0214921_100147728	F071237	GAGG	MAEKTAEQAHEKGAFIEKLLFALLPLLVGSVGYLIQALGAIQHDVTILNQKVSLVVTTDNKQASNSGAELAREKLRQDLEKEIQKKS