NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
x
This website uses cookies to improve user experience. By using NMPFamDB you consent to all cookies in accordance with our privacy policy. OK
Scaffold Ga0214921_10009834

Scaffold Ga0214921_10009834


Overview

Basic Information
Taxon OID3300023174 Open in IMG/M
Scaffold IDGa0214921_10009834 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Lake Lanier, Atlanta, Georgia, United States - LL-1505
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)11979
Total Scaffold Genes19 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)12 (63.16%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (50.00%)
Associated Families4

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Lanier, Atlanta, Georgia, United States

Source Dataset Sampling Location
Location NameUSA: Georgia
CoordinatesLat. (o)34.2611Long. (o)-83.95Alt. (m)Depth (m)2
Location on Map
Zoom:    Powered by OpenStreetMap ©

Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F009137Metagenome / Metatranscriptome322Y
F033792Metagenome / Metatranscriptome176Y
F073147Metagenome / Metatranscriptome120N
F093229Metagenome106Y

Sequences

Protein IDFamilyRBSSequence
Ga0214921_1000983412F073147AGGAGMNFELYEVWAVDEAGHEELVETTSSRKEALEIAEANLGLGVIEAVVYQEDENGDLHEIKRFNHG
Ga0214921_1000983415F093229N/AMKKEMMSKASTEPESQMPAEGVLLRKDYGDSKVYQIVCECGDCDHDHNVWVEAEDTGVTVTTYTQQKTKWWQLSRWQIIWRLLTRGYVEYEASIIMTRQQAVNYAETLKSAVKDVKEFRSENNPLTRAASKIANEGDCV
Ga0214921_1000983416F033792GGAMSIADQNENCIEDLYAKYLQFTGVMLEDYKDIEIAGVMITQALSMYRTVLPEEDYQRMVKSIYEKRNDVKSFD
Ga0214921_1000983418F009137N/AMSKELNQFCENYEVRVLNDSKRRARYHPAKFFTDPLRADIIRNDVIEYETERVFTVEIPEGRLNTLVEMERKFFNYIAHHDKPVDLFQTLMDKEREEAHYRHTNAAVQKAYEQYSIMLNLAGYQKKF

 ⦗Top⦘



© Pavlopoulos Lab, Bioinformatics & Integrative Biology | B.S.R.C. "Alexander Fleming" | Privacy Notice
Make sure JavaScript is enabled in your browser settings to achieve functionality.