Scaffold Ga0214921_10009834

Overview

Basic Information

• Taxon OID: 3300023174
• Scaffold ID: Ga0214921_10009834
• Source Dataset Name: Freshwater microbial communities from Lake Lanier, Atlanta, Georgia, United States - LL-1505
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 11979
• Total Scaffold Genes: 19
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 12 (63.16%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (50.00%)
• Associated Families: 4

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Lanier, Atlanta, Georgia, United States

Source Dataset Sampling Location

• Location Name: USA: Georgia
• Coordinates
  • Lat. (^o): 34.2611
  • Long. (^o): -83.95
  • Depth (m): 2

Associated Families

Family	Category	Number of Sequences	3D Structure?
F009137	Metagenome / Metatranscriptome	322	Y
F033792	Metagenome / Metatranscriptome	176	Y
F073147	Metagenome / Metatranscriptome	120	N
F093229	Metagenome	106	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0214921_1000983412	F073147	AGGAG	MNFELYEVWAVDEAGHEELVETTSSRKEALEIAEANLGLGVIEAVVYQEDENGDLHEIKRFNHG
Ga0214921_1000983415	F093229	N/A	MKKEMMSKASTEPESQMPAEGVLLRKDYGDSKVYQIVCECGDCDHDHNVWVEAEDTGVTVTTYTQQKTKWWQLSRWQIIWRLLTRGYVEYEASIIMTRQQAVNYAETLKSAVKDVKEFRSENNPLTRAASKIANEGDCV
Ga0214921_1000983416	F033792	GGA	MSIADQNENCIEDLYAKYLQFTGVMLEDYKDIEIAGVMITQALSMYRTVLPEEDYQRMVKSIYEKRNDVKSFD
Ga0214921_1000983418	F009137	N/A	MSKELNQFCENYEVRVLNDSKRRARYHPAKFFTDPLRADIIRNDVIEYETERVFTVEIPEGRLNTLVEMERKFFNYIAHHDKPVDLFQTLMDKEREEAHYRHTNAAVQKAYEQYSIMLNLAGYQKKF