Scaffold Ga0214921_10009553

Overview

Basic Information

• Taxon OID: 3300023174
• Scaffold ID: Ga0214921_10009553
• Source Dataset Name: Freshwater microbial communities from Lake Lanier, Atlanta, Georgia, United States - LL-1505
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 12240
• Total Scaffold Genes: 30
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 5 (16.67%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (50.00%)
• Associated Families: 4

Taxonomy: All Organisms → cellular organisms → Archaea (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Lanier, Atlanta, Georgia, United States

Source Dataset Sampling Location

• Location Name: USA: Georgia
• Coordinates
  • Lat. (^o): 34.2611
  • Long. (^o): -83.95
  • Depth (m): 2

Associated Families

Family	Category	Number of Sequences	3D Structure?
F005387	Metagenome / Metatranscriptome	402	Y
F009135	Metagenome / Metatranscriptome	322	Y
F040095	Metagenome / Metatranscriptome	162	Y
F041152	Metagenome / Metatranscriptome	160	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0214921_1000955315	F041152	N/A	VNNWDNLPKSKFDDVIVVIFKEIQNWDEGYGHHTYEGYGVDKNGNVTWCYSSGCSCSGGPDTEIKKDLKTFTVDSGIDLNVDPSTINFNLLDVEFNSY
Ga0214921_1000955321	F009135	N/A	MNKPSYYLTVNLPPNFDESDVDVIKADLMSYINSKNQYGAMYGLNSSKKGITIDKVIYRTNED
Ga0214921_1000955324	F005387	AGGA	MSKISRKGFFSTIFGGIAGIVAGSNVKASEPTPVVEKVLTCDKLVFTHSSGASCVMSFVDSDNFAIRVNNSENILININSPLKKPEPVTSNSSDLRFSCNGNIGSGTAYPTAKLAKLYIR
Ga0214921_100095537	F040095	GGA	MRLYSRKNKEDLFDIFNIDISVPRIKYGTQPGNTWGNDLPTKYIDIKFNTQFVYRKDITYWYFELTLLGFGVSVTKQIGY