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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |
| Basic Information | |
|---|---|
| Taxon OID | 3300023174 Open in IMG/M |
| Scaffold ID | Ga0214921_10007310 Open in IMG/M |
| Source Dataset Name | Freshwater microbial communities from Lake Lanier, Atlanta, Georgia, United States - LL-1505 |
| Source Dataset Category | Metagenome |
| Source Dataset Use Policy | Open |
| Sequencing Center | DOE Joint Genome Institute (JGI) |
| Sequencing Status | Permanent Draft |
| Scaffold Components | |
|---|---|
| Scaffold Length (bps) | 14771 |
| Total Scaffold Genes | 29 (view) |
| Total Scaffold Genes with Ribosome Binding Sites (RBS) | 21 (72.41%) |
| Novel Protein Genes | 9 (view) |
| Novel Protein Genes with Ribosome Binding Sites (RBS) | 5 (55.56%) |
| Associated Families | 9 |
| Taxonomy | |
|---|---|
| All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage | (Source: UniRef50) |
| Source Dataset Ecosystem |
|---|
| Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Lanier, Atlanta, Georgia, United States |
| Source Dataset Sampling Location | ||||||||
|---|---|---|---|---|---|---|---|---|
| Location Name | USA: Georgia | |||||||
| Coordinates | Lat. (o) | 34.2611 | Long. (o) | -83.95 | Alt. (m) | Depth (m) | 2 | Location on Map |
| Zoom: | Powered by OpenStreetMap © | |||||||
| Family | Category | Number of Sequences | 3D Structure? |
|---|---|---|---|
| F008296 | Metagenome | 335 | Y |
| F009064 | Metagenome / Metatranscriptome | 323 | Y |
| F010232 | Metagenome / Metatranscriptome | 306 | Y |
| F015719 | Metagenome / Metatranscriptome | 252 | Y |
| F022871 | Metagenome | 212 | Y |
| F029029 | Metagenome / Metatranscriptome | 189 | Y |
| F046331 | Metagenome / Metatranscriptome | 151 | N |
| F051888 | Metagenome / Metatranscriptome | 143 | Y |
| F067677 | Metagenome / Metatranscriptome | 125 | N |
| Protein ID | Family | RBS | Sequence |
|---|---|---|---|
| Ga0214921_1000731010 | F022871 | AGGA | MSESENVWENDEDFWNFVGENKRLVGLQISDGQGLDILNALRDIYVTIEEDPESALKMLTLLATVIYASSIGEGQQFTDEIQVASAMEQFDSSMKEMLSEEPK |
| Ga0214921_1000731015 | F046331 | N/A | MERPKRSFLFIRTGEQIVSHSEAPISITIKTPSGSLVTVRAGSGEELDQVVATGLAAITSATTELEQAIRGTVPAPMTVGTIASALGASISPMDNSTATLSGRNCPHGKMTAIQGTGKDGSMYRGYFCGAPKGAFDKCKNVYLKTTDAAWSTFVAEQVK |
| Ga0214921_1000731017 | F015719 | AGGAG | MTMYYTELDGAEPTVSTQVGGVKYTFTNDSLTRLIEEKEQLKIELAQVERKFKSARFDVREFFQARYETDSNEILAEVDDVNCLLVNIGSEELTKSWSATVTITATVTGIEAPNAEAAEQILDDAFEINLTVDGDVWVDAITVEGVHPEA |
| Ga0214921_1000731026 | F010232 | AGGAG | MRSQSELLKIKEAFALAMLDLLDVYDELLATGRVWVADEPTVNDIQKNKDESNA |
| Ga0214921_1000731027 | F051888 | N/A | MTSFALSSSTQSFSCSHENPATQLDSREEYCVECNLQQEGSSCESALNLHEINRSEQESEPALSIDTPDEKGYGHQWTNRDGEYLEGVYDITNRLPSWLFLGKHVFPMFEPDEMTAYLALPSWATICSTCHYQINRYMGCLNCEVCITTYSWSGIPFNYKLV |
| Ga0214921_1000731028 | F067677 | AGGAG | MNKFSFENARVNKVWDNKNRFNLGILDSRAVAQPDGSYQSVFVASRILTTNNPDHLEFIRKNLVDTTDAVVNISGYMETKAGKKPGTWYDNLVITDIVLAK |
| Ga0214921_100073105 | F009064 | N/A | MSTIVNLSKDEVRVCTLLAVERWLTKFGSKDKPNYAQGKLDGKLEPEINANIRANVCEWAVAKQYNLGWNTPWYPNALHTKRYPISDVGNNIEVRSIRTQTSIPFWGKDKGRIIIGTKCLDTEYYSEVEIFGYIKPEQFTKEEYYDSYINGWRVPITEFREYDIK |
| Ga0214921_100073107 | F029029 | AGAAGG | MSEKPKDIRELLNKKDYSKSMDLRGNPIGDVCICGSELFIAIVAFEQGEICFYFLDGECADCGSLVTLSTPLDEYGLDSD |
| Ga0214921_100073108 | F008296 | N/A | LKKDAWVDEYSLLVSTLASEYYKKYPVTEPEDIKQVLWVWFLTHPVKYTEWSKLPTKDKERLIARSLRNAALKYCEQEKARKVGYDISDLYYYDPSVIEAFLPSIIGNTYEIPNKIKDLNFKFGKSGEVTDGNNWLVLRSDIEKAFNKLAEAKQNILRIKFSVENYEWSDLGKELNTSADGARMKVNRAISSLIKILGGWRTYSEPDVIETKEEGEEHE |
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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |