NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0214921_10006652

Scaffold Ga0214921_10006652


Overview

Basic Information
Taxon OID3300023174 Open in IMG/M
Scaffold IDGa0214921_10006652 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Lake Lanier, Atlanta, Georgia, United States - LL-1505
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)15701
Total Scaffold Genes36 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)21 (58.33%)
Novel Protein Genes5 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (60.00%)
Associated Families5

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Lanier, Atlanta, Georgia, United States

Source Dataset Sampling Location
Location NameUSA: Georgia
CoordinatesLat. (o)34.2611Long. (o)-83.95Alt. (m)Depth (m)2
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F002935Metagenome519Y
F030765Metagenome184Y
F034573Metagenome174Y
F045752Metagenome / Metatranscriptome152Y
F093851Metagenome / Metatranscriptome106N

Sequences

Protein IDFamilyRBSSequence
Ga0214921_1000665218F030765AGGAGMDTEQTFDQEFTVEEITKAIVNQAKSDIKAKYGNKKRHRQ
Ga0214921_1000665225F034573AGGAGMYRISRAVEKSKEEKVAEKIGVLLSDFNLDLEKVGVYMSRSLPYLVFRRGLEVLESAQFQLDIVEQKRVEYNHDRLF
Ga0214921_1000665234F093851N/AMPLVGYESVDADDMIIALDSVLTTINSDDDPWLYNNTWRAMDLLKGLQAEGYFD
Ga0214921_1000665236F002935N/ATMRERSKGYLGQIVDGKKLAVIANGIYNLQYSSDFSECTVDNLLFITLEEKNVYGDNKYALVCTEGVGWEQDTYGCLEVPTNIGQMGLWNGRVFISVDTVKECLTDQTADIADYIRVFGDRLDNNCSLWQSKMSVAEDMIVV
Ga0214921_100066529F045752AGGAMADPNQTPARGDWLCPCSGCTKSIAAERKQLIELFEKHKHDYLVYRGSSFHKDTGKLMWAKDDAMAYAEGIDEVIKLIKNRMPKLKSKPL

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