Scaffold Ga0214921_10006304

Overview

Basic Information

• Taxon OID: 3300023174
• Scaffold ID: Ga0214921_10006304
• Source Dataset Name: Freshwater microbial communities from Lake Lanier, Atlanta, Georgia, United States - LL-1505
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 16325
• Total Scaffold Genes: 30
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 22 (73.33%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (33.33%)
• Associated Families: 3

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Lanier, Atlanta, Georgia, United States

Source Dataset Sampling Location

• Location Name: USA: Georgia
• Coordinates
  • Lat. (^o): 34.2611
  • Long. (^o): -83.95
  • Depth (m): 2

Associated Families

Family	Category	Number of Sequences	3D Structure?
F005531	Metagenome / Metatranscriptome	397	Y
F012455	Metagenome / Metatranscriptome	280	Y
F097334	Metagenome	104	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0214921_1000630416	F097334	N/A	MPNVLLNNDDITVLGPPEVVELLVDIGPTGTRGSQVFVGVGNPNIEGVGQTPLLNDLYINTSPGTDYGYLYQYVSQPGGNTWIEVLELNPTIYSVNHTTTYVNGVAQIVIPISNITSLTSLTASNFSVQFSIVNDNPIAASMSIPALVGNNQNLVINFKAVEHRTDVDSGPYGDWAVLEGQVTTHLFITILDEES
Ga0214921_1000630425	F005531	AGGAG	MTITYSLWQGYSLLSINNTAKNADELLEVMNDLNKLGKDFSYNVMKVEVA
Ga0214921_1000630428	F012455	N/A	MINEIKNKIIRIQELRRSNAATPISNKKKYSRKVKHKNGKQ