NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0214921_10006111

Scaffold Ga0214921_10006111


Overview

Basic Information
Taxon OID3300023174 Open in IMG/M
Scaffold IDGa0214921_10006111 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Lake Lanier, Atlanta, Georgia, United States - LL-1505
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)16660
Total Scaffold Genes36 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)21 (58.33%)
Novel Protein Genes6 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)5 (83.33%)
Associated Families6

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Lanier, Atlanta, Georgia, United States

Source Dataset Sampling Location
Location NameUSA: Georgia
CoordinatesLat. (o)34.2611Long. (o)-83.95Alt. (m)Depth (m)2
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F003688Metagenome / Metatranscriptome473Y
F004475Metagenome / Metatranscriptome436Y
F010599Metagenome / Metatranscriptome301Y
F017788Metagenome / Metatranscriptome238Y
F045545Metagenome / Metatranscriptome152Y
F054581Metagenome139Y

Sequences

Protein IDFamilyRBSSequence
Ga0214921_1000611111F017788AGGAMKKIIITFLLIALSIPSASAQAAAKSLNTKGNKSSCKNIKANYKSEVIANWSNGLASDQDLLKEIDLNISMLTAKQKSTTGKIKTTIASWIKSEKNTKIAITDKNFEAINAAMNLKIVSVTNFDKLCKSIQK
Ga0214921_1000611116F004475GAGGMTNWTEELNDKQKEEVWNFVVFTVKEIREQIAKDIEATIPLWKSKGFLKSRRTQKAFEASAAIARGQNEQIDG
Ga0214921_1000611128F010599GAGMEMMFLIFFATLSFSFGLSYWATLDKLKKSNLLLAELFIKNRALEELNSQANSGINMSDDTLHKENFIKFLSDSRDWAFEYIEKSQQTIKEVSDELKVKGLDNYSNKLLALLPEMDQWKK
Ga0214921_1000611130F045545GAGGMIKQITLFFICKIKSHDLVDAGSCPFTGKDYVACLRCGATITK
Ga0214921_1000611131F003688N/AMYTDIMRRAVHSITPPKGFGVEIIDNEHFLTVKLDEKKFLHMVHDDKISALQYVVKLKKALEECGAIVLITREAIK
Ga0214921_100061118F054581AGGMCPHCNNKLIPILYGFVDPKYVDMHKQGLVFLISTTYHTKNSPTSYCKKCEESFDIKLDYKF

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