Scaffold Ga0214921

Basic Information
Taxon OID	3300023174 Open in IMG/M
Scaffold ID	Ga0214921_10004964 Open in IMG/M
Source Dataset Name	Freshwater microbial communities from Lake Lanier, Atlanta, Georgia, United States - LL-1505
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

3300023174 Open in IMG/M

Scaffold ID

Ga0214921_10004964 Open in IMG/M

Source Dataset Name

Freshwater microbial communities from Lake Lanier, Atlanta, Georgia, United States - LL-1505

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

DOE Joint Genome Institute (JGI)

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	19120
Total Scaffold Genes	30 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	17 (56.67%)
Novel Protein Genes	6 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	2 (33.33%)
Associated Families	6

Scaffold Components

Scaffold Length (bps)

19120

Total Scaffold Genes

30 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

17 (56.67%)

Novel Protein Genes

6 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

2 (33.33%)

Associated Families

Taxonomy
All Organisms → cellular organisms → Bacteria	(Source: UniRef50)

Taxonomy

All Organisms → cellular organisms → Bacteria

(Source: UniRef50)

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Lanier, Atlanta, Georgia, United States

Source Dataset Ecosystem

Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Lanier, Atlanta, Georgia, United States

Source Dataset Sampling Location
Location Name	USA: Georgia
Coordinates	Lat. (^o)	34.2611	Long. (^o)	-83.95	Alt. (m)	Depth (m)	2
Location on Map

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Source Dataset Sampling Location

Location Name

USA: Georgia

Coordinates

Lat. (^o)

34.2611

Long. (^o)

-83.95

Alt. (m)

Depth (m)

Location on Map

Zoom:

Associated Families

Family	Category	Number of Sequences	3D Structure?
F006891	Metagenome	362	Y
F007911	Metagenome / Metatranscriptome	342	N
F014487	Metagenome / Metatranscriptome	262	Y
F024499	Metagenome / Metatranscriptome	205	N
F031026	Metagenome	183	N
F093768	Metagenome	106	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0214921_1000496416	F093768	N/A	MPLLPQAVSRPLRKINPTPAGVGIGAEYINSIIDRIEDLVLTAQSQKPVAGNNIQINYTDKGAVINVVTQ
Ga0214921_1000496423	F007911	AGG	MPAVTMLDRLIEAAFQELLSATVTGPTYHLSHDKTENMPPSIVIKATLGTEEPVQGSGVFSVPVEIVVDDSYDDTTLDAHTQKCSKILQTFYDSSSLATRLNATTAIGSARCYNAKVDSVEPEADDEERTMRRTYKLAVIAYPNSIAS
Ga0214921_1000496429	F024499	N/A	MSEFTECLKESLAALYDQTGTAATIGSTSVTGILSTITRKQAVELGGFDLDLNSTFTIDVANMATAPTIGSVLVANSVSFRIVTLDTSIGSYVLGLREF
Ga0214921_100049644	F031026	GAG	MRGGLNALLLISALALCSCATTQTQDGPPPSPDSISYFIYQWDKAERTNPPCPQAYRDLFAESLKALSDSLAETQRERARQ
Ga0214921_100049646	F006891	N/A	MSTDQVAELSERLSLVRESIARIETRQGVIMDLLERSQASLGEYHGRLTNMERDAHSIKTKLWLVALVSGAVFSTIWELIKRRISL
Ga0214921_100049648	F014487	N/A	MPLLLITLLLCSCSPKQTDNTELPDYSDMGAAADAGKAK

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0214921_10004964

Overview

Ecosystem & Geography

Associated Families

Sequences