Basic Information | |
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Taxon OID | 3300023174 Open in IMG/M |
Scaffold ID | Ga0214921_10004942 Open in IMG/M |
Source Dataset Name | Freshwater microbial communities from Lake Lanier, Atlanta, Georgia, United States - LL-1505 |
Source Dataset Category | Metagenome |
Source Dataset Use Policy | Open |
Sequencing Center | DOE Joint Genome Institute (JGI) |
Sequencing Status | Permanent Draft |
Scaffold Components | |
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Scaffold Length (bps) | 19178 |
Total Scaffold Genes | 30 (view) |
Total Scaffold Genes with Ribosome Binding Sites (RBS) | 21 (70.00%) |
Novel Protein Genes | 5 (view) |
Novel Protein Genes with Ribosome Binding Sites (RBS) | 3 (60.00%) |
Associated Families | 5 |
Taxonomy | |
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All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes | (Source: UniRef50) |
Source Dataset Ecosystem |
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Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Lanier, Atlanta, Georgia, United States |
Source Dataset Sampling Location | ||||||||
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Location Name | USA: Georgia | |||||||
Coordinates | Lat. (o) | 34.2611 | Long. (o) | -83.95 | Alt. (m) | Depth (m) | 2 | Location on Map |
Zoom: | Powered by OpenStreetMap © |
Family | Category | Number of Sequences | 3D Structure? |
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F000635 | Metagenome / Metatranscriptome | 970 | Y |
F002149 | Metagenome / Metatranscriptome | 589 | Y |
F003112 | Metagenome / Metatranscriptome | 506 | N |
F004760 | Metagenome / Metatranscriptome | 424 | N |
F007467 | Metagenome / Metatranscriptome | 350 | Y |
Protein ID | Family | RBS | Sequence |
---|---|---|---|
Ga0214921_1000494217 | F000635 | N/A | MTLTEIAQYAGEKVGKTDSDTLTFLQKAASLAYRRVWDFAPWRETVTNSTYSVGTNRQITLGTNVETPLSVAYNDAEVDPIDLATIVSQDPGLLDDARTGDPDTYHFTGRNSSGVAQLNLYPRLATSGTIPLRVVEKLKCLTRTNIIVDFPPSQAALDDELRLPHVHHLVLALTHSDALERERQYAKAQAITQTANTDLAAMANYELSQVGGVKQITPQSLGELTIEEMFSA |
Ga0214921_1000494219 | F002149 | AGCAG | MTAVEYIEQSGVPEAMWPNLAEWFGWFEKQGMVGVVEDKDGIAGVALARCVKDGQEPNHYVHSEDGQNVFVDLTISSKGAKSLRCLLLLLWERFGPRERITFNRSGKPRSYCYMTFMRKARV |
Ga0214921_1000494227 | F007467 | N/A | VNEKEAWAKFEEGLKDMESFDEAVAWVKKNKKIVEKLTMMAMIRRFNEDISRANRTWRN |
Ga0214921_100049424 | F004760 | AGGA | MPVYQYEDTRNGKVIELEKAVAERDSVPRYLKRFTVPQRLSLVGVGEPLDNPLGVNQTNLMKGYYRQEQKLGSRFRSQYTPDSIKRAAIRRK |
Ga0214921_100049429 | F003112 | GAG | MTRSEYACFKEALKFAVENNNMVKETKYIGKVKHLLSVNRSIKRIVEEGRDRDEVVDAVVHLAVALKYLEGKGRES |
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