NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0214921_10004942

Scaffold Ga0214921_10004942


Overview

Basic Information
Taxon OID3300023174 Open in IMG/M
Scaffold IDGa0214921_10004942 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Lake Lanier, Atlanta, Georgia, United States - LL-1505
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)19178
Total Scaffold Genes30 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)21 (70.00%)
Novel Protein Genes5 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (60.00%)
Associated Families5

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Lanier, Atlanta, Georgia, United States

Source Dataset Sampling Location
Location NameUSA: Georgia
CoordinatesLat. (o)34.2611Long. (o)-83.95Alt. (m)Depth (m)2
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000635Metagenome / Metatranscriptome970Y
F002149Metagenome / Metatranscriptome589Y
F003112Metagenome / Metatranscriptome506N
F004760Metagenome / Metatranscriptome424N
F007467Metagenome / Metatranscriptome350Y

Sequences

Protein IDFamilyRBSSequence
Ga0214921_1000494217F000635N/AMTLTEIAQYAGEKVGKTDSDTLTFLQKAASLAYRRVWDFAPWRETVTNSTYSVGTNRQITLGTNVETPLSVAYNDAEVDPIDLATIVSQDPGLLDDARTGDPDTYHFTGRNSSGVAQLNLYPRLATSGTIPLRVVEKLKCLTRTNIIVDFPPSQAALDDELRLPHVHHLVLALTHSDALERERQYAKAQAITQTANTDLAAMANYELSQVGGVKQITPQSLGELTIEEMFSA
Ga0214921_1000494219F002149AGCAGMTAVEYIEQSGVPEAMWPNLAEWFGWFEKQGMVGVVEDKDGIAGVALARCVKDGQEPNHYVHSEDGQNVFVDLTISSKGAKSLRCLLLLLWERFGPRERITFNRSGKPRSYCYMTFMRKARV
Ga0214921_1000494227F007467N/AVNEKEAWAKFEEGLKDMESFDEAVAWVKKNKKIVEKLTMMAMIRRFNEDISRANRTWRN
Ga0214921_100049424F004760AGGAMPVYQYEDTRNGKVIELEKAVAERDSVPRYLKRFTVPQRLSLVGVGEPLDNPLGVNQTNLMKGYYRQEQKLGSRFRSQYTPDSIKRAAIRRK
Ga0214921_100049429F003112GAGMTRSEYACFKEALKFAVENNNMVKETKYIGKVKHLLSVNRSIKRIVEEGRDRDEVVDAVVHLAVALKYLEGKGRES

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