NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0214921_10004723

Scaffold Ga0214921_10004723


Overview

Basic Information
Taxon OID3300023174 Open in IMG/M
Scaffold IDGa0214921_10004723 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Lake Lanier, Atlanta, Georgia, United States - LL-1505
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)19818
Total Scaffold Genes54 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)3 (5.56%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (33.33%)
Associated Families3

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Lanier, Atlanta, Georgia, United States

Source Dataset Sampling Location
Location NameUSA: Georgia
CoordinatesLat. (o)34.2611Long. (o)-83.95Alt. (m)Depth (m)2
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F013299Metagenome / Metatranscriptome272Y
F076636Metagenome / Metatranscriptome118Y
F090385Metagenome / Metatranscriptome108Y

Sequences

Protein IDFamilyRBSSequence
Ga0214921_1000472338F090385GAGMSAQTDMKVISVLLDEAMEHGLEVEVIYSALKTMREDDAITPSQAMQVAMDEWVK
Ga0214921_1000472352F013299N/AMEKSKRVKQKDDKREWFIVMNSDLEYYCGMMYGGQLVWSSDYREAKPLDDEAKFKTIKSLSYGKEIILDYI
Ga0214921_100047238F076636N/AMTKKEIKSAINKAVYQYAESLGYNMSDDNDGSSVTFYKDGYTKADDTIEYHRSYQETCVLNWASDEIKADAELIDAFANEQKRMYDK

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