Scaffold Ga0214921_10004453

Overview

Basic Information

• Taxon OID: 3300023174
• Scaffold ID: Ga0214921_10004453
• Source Dataset Name: Freshwater microbial communities from Lake Lanier, Atlanta, Georgia, United States - LL-1505
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 20602
• Total Scaffold Genes: 27
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 16 (59.26%)
• Novel Protein Genes: 5
• Novel Protein Genes with Ribosome Binding Sites (RBS): 4 (80.00%)
• Associated Families: 5

Taxonomy: All Organisms → cellular organisms → Bacteria (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Lanier, Atlanta, Georgia, United States

Source Dataset Sampling Location

• Location Name: USA: Georgia
• Coordinates
  • Lat. (^o): 34.2611
  • Long. (^o): -83.95
  • Depth (m): 2

Associated Families

Family	Category	Number of Sequences	3D Structure?
F001459	Metagenome / Metatranscriptome	690	Y
F004760	Metagenome / Metatranscriptome	424	N
F010449	Metagenome / Metatranscriptome	303	N
F010603	Metagenome / Metatranscriptome	301	Y
F012569	Metagenome / Metatranscriptome	279	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0214921_1000445313	F010449	GGGGG	MSEEQVWNMEVRLARMEERQVQLYSMVERSLANYADIANKVNALEHLRTKILALSGVIGLICSMAWDVIKNRNN
Ga0214921_1000445317	F012569	N/A	MSRALDKFQGQYGFSVGTQGTATAGYWAIQMLSDTTFSAISGKYDGTLTGVTIGSGNIIYGEFNSYTAGTGKVIGYIAG
Ga0214921_1000445318	F010603	AGGAG	MANEFVRSTRKAKGKAIRFDTQGFTNVFEITASSSGGTVNTVATATASLNVTLNGTSYRIALHT
Ga0214921_1000445319	F004760	AGGAG	MPIYQYTDTRNGSVVELEKSVAERDSVPKHLKRFTVPQRLALVGVGEPLDNPLGTNKTNIMKGYYKQEQKLGSRFKSEFSADQVKRAWSRKGD
Ga0214921_1000445323	F001459	GGGGG	MRRLRAIMAFIRHQEWVDEPKWEAEDERALTGFLGTLAGKKLSLILLNLTLRQNASAVEKDTNSLAEACGYAKGFRGCVATIESLCSPKQNSPILDSRDGVDESAVN